Variant report

Variant	rs570686
Chromosome Location	chr4:172748274-172748275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1872522	0.81[CHB][hapmap]
rs1965323	0.82[CHB][hapmap]
rs478834	0.82[CHB][hapmap]
rs480440	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs484310	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs494219	0.93[CHB][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.87[MKK][hapmap];0.88[ASN][1000 genomes]
rs495911	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs555947	0.82[CHB][hapmap]
rs558129	0.96[CEU][hapmap];0.93[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap]
rs558201	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs566836	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6844583	0.83[ASN][1000 genomes]
rs7676508	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv881310	chr4:172633978-172751522	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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