Variant report

Variant	rs570692042
Chromosome Location	chr12:117128488-117128489
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv521649	chr12:117127540-117136787	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117125000-117130800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:117125600-117129000	Enhancers	Primary hematopoietic stem cells	blood
3	chr12:117126000-117131400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:117126000-117133000	Weak transcription	Spleen	Spleen
5	chr12:117126200-117130800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:117126200-117131600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:117127400-117128600	Enhancers	Fetal Brain Female	brain
8	chr12:117127600-117128600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr12:117127600-117134800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr12:117127800-117128600	Bivalent Enhancer	Fetal Heart	heart
11	chr12:117128000-117129600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr12:117128000-117130200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr12:117128000-117130400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr12:117128200-117130200	Weak transcription	Primary B cells from cord blood	blood
15	chr12:117128400-117129800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr12:117128400-117130000	Weak transcription	Fetal Brain Male	brain
17	chr12:117128400-117130200	Weak transcription	Brain Germinal Matrix	brain
18	chr12:117128400-117131000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links