Variant report

Variant	rs57070162
Chromosome Location	chr12:63239578-63239579
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63239285..63241895-chr12:63253265..63255649,2	MCF-7	breast:
2	chr12:63227346..63229238-chr12:63238157..63241100,2	K562	blood:
3	chr12:63239407..63241171-chr12:63244280..63246692,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200296	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55665363	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63226200-63240600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:63228800-63242600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:63229200-63242200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr12:63229400-63240400	Weak transcription	Osteobl	bone
5	chr12:63234000-63241400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:63236400-63240400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:63236800-63241200	Weak transcription	Gastric	stomach
8	chr12:63236800-63243800	Weak transcription	Small Intestine	intestine
9	chr12:63237200-63239600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr12:63237200-63239800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr12:63237200-63241000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr12:63237200-63241200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr12:63237400-63241000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr12:63237600-63239600	Enhancers	Fetal Intestine Large	intestine
15	chr12:63237600-63241000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:63237800-63241400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr12:63237800-63242400	Weak transcription	GM12878-XiMat	blood
18	chr12:63237800-63243400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr12:63238000-63240400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr12:63238000-63240600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr12:63238000-63240600	Enhancers	HepG2	liver
22	chr12:63238000-63242400	Weak transcription	Left Ventricle	heart
23	chr12:63238200-63239600	Weak transcription	Brain Anterior Caudate	brain
24	chr12:63238200-63239600	Weak transcription	Brain Hippocampus Middle	brain
25	chr12:63238200-63240400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr12:63238200-63240400	Weak transcription	Brain Substantia Nigra	brain
27	chr12:63238200-63240400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr12:63238200-63240400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr12:63238200-63240800	Weak transcription	Adipose Nuclei	Adipose
30	chr12:63238200-63241000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr12:63238200-63241200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr12:63238400-63241200	Weak transcription	A549	lung
33	chr12:63238600-63242400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr12:63239000-63239800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr12:63239000-63239800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr12:63239200-63240000	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr12:63239200-63240400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr12:63239200-63240400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr12:63239200-63240600	Weak transcription	Brain Angular Gyrus	brain
40	chr12:63239200-63242200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr12:63239200-63242600	Enhancers	Brain Cingulate Gyrus	brain
42	chr12:63239400-63240000	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr12:63239400-63240400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr12:63239400-63240400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr12:63239400-63240600	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr12:63239400-63243000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr12:63239400-63260200	Weak transcription	Fetal Intestine Small	intestine

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