Variant report

Variant	rs570726669
Chromosome Location	chr2:98385815-98385816
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98375149..98376830-chr2:98384881..98387023,2	MCF-7	breast:
2	chr2:98378430..98380817-chr2:98383033..98385975,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075568	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531382	chr2:98250628-98457616	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3459698	chr2:98385192-98385819	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98352200-98398800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:98366200-98400000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr2:98368000-98393800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr2:98368600-98413000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:98369600-98398800	Strong transcription	Fetal Muscle Leg	muscle
6	chr2:98370200-98392600	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:98370400-98386400	Strong transcription	Fetal Intestine Small	intestine
8	chr2:98370600-98392400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:98370600-98393800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:98370600-98407600	Weak transcription	HUVEC	blood vessel
11	chr2:98371200-98387400	Strong transcription	Liver	Liver
12	chr2:98371200-98398600	Strong transcription	Primary B cells from cord blood	blood
13	chr2:98373800-98390400	Weak transcription	K562	blood
14	chr2:98375800-98386600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:98377200-98394400	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr2:98377400-98408000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr2:98377400-98410600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:98378200-98389600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:98378600-98421400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:98380800-98393800	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr2:98381400-98397600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:98382000-98388800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:98382200-98386200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr2:98382600-98388600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:98382600-98389600	Weak transcription	Gastric	stomach
26	chr2:98382600-98391600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr2:98382800-98386200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr2:98382800-98386200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr2:98382800-98386200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr2:98382800-98387400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:98382800-98387600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr2:98382800-98387600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr2:98382800-98387600	Weak transcription	NHDF-Ad	bronchial
34	chr2:98382800-98388400	Weak transcription	NH-A	brain
35	chr2:98382800-98389000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr2:98382800-98389000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr2:98382800-98389400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr2:98382800-98398600	Weak transcription	Small Intestine	intestine
39	chr2:98382800-98419800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr2:98383000-98386400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr2:98383000-98386800	Enhancers	Fetal Heart	heart
42	chr2:98383000-98387400	Weak transcription	Brain Germinal Matrix	brain
43	chr2:98383000-98387400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr2:98383000-98387400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr2:98383000-98387800	Weak transcription	Osteobl	bone
46	chr2:98383000-98388000	Weak transcription	Brain Anterior Caudate	brain
47	chr2:98383000-98388200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr2:98383000-98390000	Weak transcription	Brain Angular Gyrus	brain
49	chr2:98383000-98390200	Weak transcription	Brain Substantia Nigra	brain
50	chr2:98383000-98408600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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