Variant report

Variant	rs57077362
Chromosome Location	chr12:32744835-32744836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32739278..32740962-chr12:32742875..32745661,2	K562	blood:
2	chr12:32738492..32740640-chr12:32742992..32745754,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11052086	0.83[AMR][1000 genomes]
rs12301170	0.83[AMR][1000 genomes]
rs12318679	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12322494	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072671	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7962643	0.83[AMR][1000 genomes]
rs7976053	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32713000-32780400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr12:32713400-32796200	Weak transcription	Fetal Lung	lung
3	chr12:32715200-32753800	Weak transcription	Fetal Brain Female	brain
4	chr12:32715200-32760200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:32720000-32764800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:32720200-32778400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr12:32722600-32754400	Weak transcription	Colonic Mucosa	Colon
8	chr12:32722600-32757600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr12:32722600-32764800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr12:32722600-32764800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr12:32722600-32764800	Weak transcription	Psoas Muscle	Psoas
12	chr12:32722600-32779400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr12:32723600-32756600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr12:32725200-32778600	Weak transcription	Fetal Brain Male	brain
15	chr12:32728600-32757000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr12:32731800-32753400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr12:32732400-32756600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:32733200-32764800	Weak transcription	Esophagus	oesophagus
19	chr12:32735400-32758400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr12:32735400-32765000	Weak transcription	Small Intestine	intestine
21	chr12:32735600-32754400	Weak transcription	Aorta	Aorta
22	chr12:32735800-32753800	Weak transcription	Placenta	Placenta
23	chr12:32736200-32746400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr12:32736200-32764000	Weak transcription	Brain Germinal Matrix	brain
25	chr12:32736400-32754200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr12:32736400-32760200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr12:32736600-32747000	Weak transcription	Ovary	ovary
28	chr12:32736600-32757000	Weak transcription	HepG2	liver
29	chr12:32736800-32757400	Weak transcription	Fetal Kidney	kidney
30	chr12:32737200-32754200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr12:32739000-32747000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr12:32739000-32757000	Weak transcription	Gastric	stomach
33	chr12:32739600-32754400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr12:32739600-32760200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr12:32739800-32747600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr12:32739800-32753600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr12:32739800-32753600	Weak transcription	NH-A	brain
38	chr12:32739800-32756800	Weak transcription	NHDF-Ad	bronchial
39	chr12:32739800-32764600	Weak transcription	NHLF	lung
40	chr12:32740200-32746800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr12:32740600-32746200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr12:32740600-32756200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr12:32740800-32745000	Strong transcription	Fetal Intestine Large	intestine
44	chr12:32740800-32745200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr12:32740800-32747400	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr12:32741000-32745000	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr12:32741000-32745000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr12:32741000-32747600	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr12:32741000-32747800	Strong transcription	HSMM	muscle
50	chr12:32741200-32747600	Strong transcription	HUES64 Cell Line	embryonic stem cell

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