Variant report

Variant	rs57078059
Chromosome Location	chr8:126627170-126627171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126606536..126608218-chr8:126626974..126628718,2	MCF-7	breast:
2	chr8:126619524..126621490-chr8:126626488..126629333,2	K562	blood:
3	chr8:126619990..126624184-chr8:126625667..126627988,3	K562	blood:
4	chr8:126442492..126444588-chr8:126626090..126628440,2	MCF-7	breast:
5	chr8:126619050..126624593-chr8:126625487..126628558,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIB1-12	chr8:126626798-126627375	NONHSAT128977

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1015109	0.89[AMR][1000 genomes]
rs11777118	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11783267	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11991475	0.84[EUR][1000 genomes]
rs11995177	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11996453	0.89[AMR][1000 genomes]
rs11998450	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13255329	0.81[EUR][1000 genomes]
rs13269369	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13277305	0.81[EUR][1000 genomes]
rs2891718	0.80[EUR][1000 genomes]
rs7004111	0.81[EUR][1000 genomes]
rs7004305	0.81[EUR][1000 genomes]
rs7004432	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6377	chr8:126579620-126639253	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv38	chr8:126593465-126639253	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3376403	chr8:126624370-126628568	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126618800-126627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:126620200-126627800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:126624000-126628200	Enhancers	Fetal Muscle Leg	muscle
4	chr8:126624600-126628000	Enhancers	Placenta	Placenta
5	chr8:126625400-126627200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:126625400-126627200	Enhancers	Adipose Nuclei	Adipose
7	chr8:126625600-126627400	Enhancers	Fetal Lung	lung
8	chr8:126625600-126627600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:126625600-126627800	Enhancers	Fetal Brain Male	brain
10	chr8:126626000-126627200	Enhancers	Brain Cingulate Gyrus	brain
11	chr8:126626400-126627600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr8:126626400-126627800	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:126626600-126627200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr8:126626600-126627200	Enhancers	Spleen	Spleen
15	chr8:126626600-126627400	Weak transcription	HSMMtube	muscle
16	chr8:126626600-126627600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr8:126626600-126627800	Enhancers	Fetal Heart	heart
18	chr8:126627000-126627200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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