Variant report

Variant	rs570784134
Chromosome Location	chr15:59273304-59273305
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59271260..59274887-chr15:59397313..59399336,3	K562	blood:
2	chr15:59272151..59273342-chr15:59429978..59430828,6	MCF-7	breast:
3	chr15:59271482..59274101-chr15:59428986..59430660,2	MCF-7	breast:
4	chr15:59272484..59273573-chr15:59453101..59454034,3	MCF-7	breast:
5	chr15:59270904..59273461-chr15:59278790..59281623,2	MCF-7	breast:
6	chr15:59264832..59268316-chr15:59270514..59274227,3	K562	blood:
7	chr15:59271834..59273496-chr15:59277776..59280062,2	K562	blood:

Variant related genes	Relation type
ENSG00000157450	Chromatin interaction
ENSG00000157456	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv94885	chr15:59273111-59274458	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59265600-59279200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:59266000-59274400	Enhancers	Primary B cells from peripheral blood	blood
3	chr15:59268000-59273800	Weak transcription	Adipose Nuclei	Adipose
4	chr15:59268600-59274000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:59268600-59279000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:59269000-59273400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:59269600-59274400	Enhancers	Primary B cells from cord blood	blood
8	chr15:59270000-59274000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:59271400-59274200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:59271600-59273400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:59271800-59273600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr15:59271800-59273600	Enhancers	Duodenum Mucosa	Duodenum
13	chr15:59272000-59273800	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr15:59272200-59274400	Flanking Active TSS	GM12878-XiMat	blood
15	chr15:59272200-59279200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:59272400-59279200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:59272400-59279200	Weak transcription	NHEK	skin
18	chr15:59272600-59273600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:59272600-59273600	Weak transcription	Osteobl	bone
20	chr15:59272600-59273800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr15:59272600-59273800	Enhancers	Dnd41	blood
22	chr15:59272600-59274000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:59272800-59273600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr15:59272800-59274000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:59272800-59274400	Enhancers	Primary hematopoietic stem cells	blood
26	chr15:59272800-59274600	Enhancers	Primary T cells from cord blood	blood
27	chr15:59273000-59273400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr15:59273000-59273600	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr15:59273000-59273800	Enhancers	Primary T cells fromperipheralblood	blood
30	chr15:59273000-59273800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:59273000-59273800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr15:59273000-59273800	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr15:59273000-59273800	Enhancers	NHLF	lung
34	chr15:59273000-59274000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr15:59273000-59274000	Enhancers	Liver	Liver
36	chr15:59273000-59274600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:59273200-59273800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr15:59273200-59274000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr15:59273200-59274000	Enhancers	NHDF-Ad	bronchial
40	chr15:59273200-59274600	Enhancers	Fetal Thymus	thymus

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