Variant report

Variant	rs570803673
Chromosome Location	chr6:140369151-140369152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139694166..139695785-chr6:140367777..140369487,2	MCF-7	breast:
2	chr6:140368572..140371123-chr6:140374130..140376086,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3417185	chr6:140369057-140369235	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140363400-140370800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:140363400-140370800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:140365600-140373000	Weak transcription	Fetal Intestine Small	intestine
4	chr6:140365600-140374200	Weak transcription	A549	lung
5	chr6:140365800-140371200	Weak transcription	Osteobl	bone
6	chr6:140366400-140370600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:140366600-140371200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:140366600-140371200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:140366600-140372000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:140366800-140369400	Weak transcription	Hela-S3	cervix
11	chr6:140366800-140370200	Weak transcription	Fetal Heart	heart
12	chr6:140366800-140370600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:140366800-140370600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:140366800-140370800	Weak transcription	NH-A	brain
15	chr6:140366800-140371400	Weak transcription	HMEC	breast
16	chr6:140366800-140371400	Weak transcription	NHLF	lung
17	chr6:140366800-140371600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:140366800-140371600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:140366800-140372200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:140367000-140371400	Weak transcription	HSMM	muscle
21	chr6:140367200-140371400	Weak transcription	NHDF-Ad	bronchial
22	chr6:140367400-140370600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:140367400-140370800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:140367600-140370800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:140367600-140371400	Weak transcription	NHEK	skin
26	chr6:140368000-140371200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr6:140368200-140369400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:140368400-140371000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links