Variant report

Variant	rs570834326
Chromosome Location	chr7:66019576-66019577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv482441	chr7:65885824-66061788	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	esv3447484	chr7:65909457-66033145	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	esv3377926	chr7:65934493-66051484	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
9	nsv888327	chr7:65938980-66029429	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	esv3423847	chr7:65941210-66054107	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
11	nsv981510	chr7:66019344-66019844	Genic enhancers Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65999800-66022400	Strong transcription	Fetal Stomach	stomach
2	chr7:66001400-66022400	Weak transcription	Stomach Mucosa	stomach
3	chr7:66003800-66022200	Strong transcription	Stomach Smooth Muscle	stomach
4	chr7:66003800-66022800	Strong transcription	Fetal Intestine Small	intestine
5	chr7:66004400-66052600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:66004800-66037200	Weak transcription	Psoas Muscle	Psoas
7	chr7:66005200-66022400	Strong transcription	Fetal Muscle Trunk	muscle
8	chr7:66006000-66020000	Strong transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:66006000-66022200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:66006200-66021000	Strong transcription	Fetal Intestine Large	intestine
11	chr7:66006200-66022200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:66006200-66022400	Strong transcription	Lung	lung
13	chr7:66006200-66022600	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:66006200-66024400	Strong transcription	Fetal Muscle Leg	muscle
15	chr7:66006200-66024400	Strong transcription	Thymus	Thymus
16	chr7:66006400-66022800	Strong transcription	Brain Germinal Matrix	brain
17	chr7:66006600-66022800	Weak transcription	Fetal Brain Male	brain
18	chr7:66007600-66021000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr7:66008200-66022000	Weak transcription	Right Atrium	heart
20	chr7:66008200-66022200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:66008400-66022600	Weak transcription	Fetal Heart	heart
22	chr7:66008600-66056000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:66008800-66022400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr7:66008800-66022400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr7:66008800-66022600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr7:66009000-66020200	Strong transcription	Fetal Thymus	thymus
27	chr7:66009000-66020600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr7:66009000-66022800	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr7:66009000-66023000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:66009000-66031400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr7:66009200-66020200	Strong transcription	Brain Hippocampus Middle	brain
32	chr7:66009200-66023600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr7:66009200-66029400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:66011000-66037000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:66011600-66045000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:66012200-66020000	Strong transcription	H9 Cell Line	embryonic stem cell
37	chr7:66012400-66019800	Strong transcription	Right Ventricle	heart
38	chr7:66012400-66020000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr7:66012400-66024600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr7:66012600-66020000	Strong transcription	Pancreas	Pancrea
41	chr7:66012600-66021000	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr7:66012600-66022600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr7:66012600-66022600	Strong transcription	Liver	Liver
44	chr7:66012600-66024200	Strong transcription	Dnd41	blood
45	chr7:66012800-66020000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr7:66013000-66031800	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr7:66013200-66020000	Strong transcription	Duodenum Mucosa	Duodenum
48	chr7:66013200-66020600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr7:66013200-66022400	Strong transcription	Ovary	ovary
50	chr7:66013200-66022600	Strong transcription	Placenta	Placenta

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