Variant report

Variant	rs57083517
Chromosome Location	chr3:178546365-178546366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13326218	1.00[AMR][1000 genomes]
rs56174135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58819411	1.00[AMR][1000 genomes]
rs59302555	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61306418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61510530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6793389	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73053741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73053744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73882873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9824771	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1841956	chr3:178545276-178550530	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178541200-178558400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:178541600-178547000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:178541800-178547800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:178541800-178550600	Weak transcription	Fetal Kidney	kidney
5	chr3:178542000-178547200	Weak transcription	Fetal Stomach	stomach
6	chr3:178542000-178563600	Weak transcription	Aorta	Aorta
7	chr3:178543600-178551200	Weak transcription	Ovary	ovary
8	chr3:178544600-178546400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:178545000-178546400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:178545000-178546800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:178545200-178546600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr3:178545200-178557800	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:178545400-178546400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:178546200-178546400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:178546200-178546400	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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