Variant report

Variant	rs570838649
Chromosome Location	chr15:83864141-83864142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83861740..83863529-chr15:83864105..83865780,2	K562	blood:
2	chr15:83862175..83865617-chr15:83873380..83877814,4	K562	blood:
3	chr15:83827913..83829860-chr15:83861964..83864558,2	MCF-7	breast:
4	chr15:83857083..83859272-chr15:83864113..83866695,2	MCF-7	breast:
5	chr15:83734109..83736654-chr15:83864110..83865961,2	K562	blood:
6	chr15:83733943..83736754-chr15:83863443..83865610,3	K562	blood:
7	chr15:83861348..83866497-chr15:83870709..83877751,10	K562	blood:
8	chr15:83863825..83865327-chr15:83865612..83867944,2	MCF-7	breast:
9	chr15:83733605..83736253-chr15:83862625..83865448,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000064726	Chromatin interaction
ENSG00000263643	Chromatin interaction
ENSG00000166503	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv984103	chr15:83863797-83864417	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83832200-83865600	Weak transcription	HSMM	muscle
2	chr15:83836000-83870200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:83837000-83873600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:83840000-83867200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:83840000-83867200	Weak transcription	Fetal Brain Female	brain
6	chr15:83840200-83869200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:83841200-83872600	Weak transcription	Brain Germinal Matrix	brain
8	chr15:83841800-83870400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr15:83847400-83873400	Weak transcription	Fetal Kidney	kidney
10	chr15:83854600-83864200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:83857000-83864200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:83858800-83865600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:83861000-83873600	Weak transcription	Left Ventricle	heart
14	chr15:83861000-83873600	Weak transcription	Right Atrium	heart
15	chr15:83861200-83868400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:83861600-83864800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr15:83861600-83869200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:83861800-83869200	Weak transcription	HSMMtube	muscle
19	chr15:83861800-83870400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:83861800-83871600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:83862000-83864800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr15:83862000-83867000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr15:83862200-83864200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr15:83862600-83865000	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr15:83862600-83865600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:83862800-83865600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:83862800-83865600	Weak transcription	NHDF-Ad	bronchial
28	chr15:83862800-83866400	Weak transcription	Ovary	ovary
29	chr15:83862800-83875200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:83863200-83870400	Weak transcription	A549	lung
31	chr15:83863200-83871600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:83863400-83864800	Enhancers	HUVEC	blood vessel
33	chr15:83863400-83866600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:83863600-83864400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr15:83863600-83872600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:83863600-83873400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:83863600-83874400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr15:83863800-83865400	Weak transcription	HMEC	breast
39	chr15:83863800-83869200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:83864000-83864200	Enhancers	GM12878-XiMat	blood
41	chr15:83864000-83865000	Weak transcription	NHEK	skin
42	chr15:83864000-83865400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:83864000-83865600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:83864000-83873000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr15:83864000-83873400	Weak transcription	H1 Cell Line	embryonic stem cell

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