Variant report

Variant	rs57085580
Chromosome Location	chr6:15779911-15779912
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55950950	0.90[AFR][1000 genomes]
rs56184273	1.00[AMR][1000 genomes]
rs58609576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59498459	0.83[AFR][1000 genomes]
rs60967701	0.96[AFR][1000 genomes]
rs6917295	1.00[AMR][1000 genomes]
rs6941475	0.96[AFR][1000 genomes]
rs73727216	0.83[AFR][1000 genomes]
rs9464842	1.00[AMR][1000 genomes]
rs9476981	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15762200-15782000	Weak transcription	Pancreas	Pancrea
2	chr6:15777000-15780200	Weak transcription	GM12878-XiMat	blood
3	chr6:15778600-15784800	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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