Variant report

Variant	rs57085808
Chromosome Location	chr5:8496279-8496280
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10068072	0.83[ASN][1000 genomes]
rs1394642	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880714	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16880716	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880725	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16880754	0.95[ASN][1000 genomes]
rs2166872	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs365719	0.95[ASN][1000 genomes]
rs368753	0.97[ASN][1000 genomes]
rs371677	0.97[ASN][1000 genomes]
rs372326	0.95[ASN][1000 genomes]
rs372588	0.97[ASN][1000 genomes]
rs372695	0.97[ASN][1000 genomes]
rs374142	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs374856	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs376041	0.97[ASN][1000 genomes]
rs376478	0.95[ASN][1000 genomes]
rs377644	0.97[ASN][1000 genomes]
rs377721	0.95[ASN][1000 genomes]
rs383026	0.97[ASN][1000 genomes]
rs384423	0.97[ASN][1000 genomes]
rs384797	0.97[ASN][1000 genomes]
rs386120	0.97[ASN][1000 genomes]
rs386332	0.95[ASN][1000 genomes]
rs391942	0.97[ASN][1000 genomes]
rs392469	0.97[ASN][1000 genomes]
rs393704	0.97[ASN][1000 genomes]
rs394114	0.97[ASN][1000 genomes]
rs394670	0.97[ASN][1000 genomes]
rs395753	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs396042	0.97[ASN][1000 genomes]
rs396055	0.95[ASN][1000 genomes]
rs397939	0.97[ASN][1000 genomes]
rs398188	0.97[ASN][1000 genomes]
rs398928	0.97[ASN][1000 genomes]
rs402359	0.97[ASN][1000 genomes]
rs404767	0.97[ASN][1000 genomes]
rs414613	0.97[ASN][1000 genomes]
rs418698	0.97[ASN][1000 genomes]
rs432221	0.90[ASN][1000 genomes]
rs432665	0.97[ASN][1000 genomes]
rs438193	0.97[ASN][1000 genomes]
rs443746	0.97[ASN][1000 genomes]
rs444945	0.94[ASN][1000 genomes]
rs446916	0.97[ASN][1000 genomes]
rs447586	0.97[ASN][1000 genomes]
rs449352	0.95[ASN][1000 genomes]
rs59216168	0.95[ASN][1000 genomes]
rs60932532	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6870322	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7718126	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033505	chr5:8258074-8657627	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv537634	chr5:8258074-8657627	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1026496	chr5:8275119-8681693	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
4	nsv537635	chr5:8275119-8681693	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
5	nsv427709	chr5:8353876-8519855	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv881034	chr5:8376813-8499567	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv880933	chr5:8467174-8688962	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv461929	chr5:8467900-8664747	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv597028	chr5:8467900-8664747	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv470987	chr5:8467900-8680327	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8496200-8496400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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