Variant report

Variant	rs57086124
Chromosome Location	chr1:173539617-173539618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1031751	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58977252	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61649485	0.81[EUR][1000 genomes]
rs7539322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872549	chr1:173509586-173546835	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173539000-173540600	Enhancers	HSMMtube	muscle
2	chr1:173539200-173540400	Enhancers	Dnd41	blood
3	chr1:173539400-173540200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:173539600-173539800	Enhancers	GM12878-XiMat	blood
5	chr1:173539600-173540000	Enhancers	Adipose Nuclei	Adipose
6	chr1:173539600-173540000	Enhancers	HSMM	muscle
7	chr1:173539600-173540600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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