Variant report

Variant	rs570869255
Chromosome Location	chr15:57026032-57026033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr15:57025369-57026455	MCF-7	breast:	n/a	n/a
2	PAX5	chr15:57025302-57026158	GM12892	blood:	n/a	chr15:57026115-57026124 chr15:57025362-57025371
3	SP1	chr15:57025642-57026052	GM12878	blood:	n/a	chr15:57025885-57025896 chr15:57025973-57025987
4	E2F6	chr15:57024807-57026861	H1-hESC	embryonic stem cell:	n/a	chr15:57025488-57025498 chr15:57025541-57025550 chr15:57025808-57025818 chr15:57025866-57025881
5	TCF12	chr15:57025473-57026130	ECC-1	luminal epithelium:	n/a	n/a
6	POLR2A	chr15:57023823-57026048	GM12878	blood:	n/a	n/a
7	JUND	chr15:57024838-57026080	K562	blood:	n/a	chr15:57025885-57025894 chr15:57026028-57026042
8	TCF7L2	chr15:57025717-57026247	PANC-1	pancreas:	n/a	n/a
9	THAP1	chr15:57025732-57026047	K562	blood:	n/a	n/a
10	CREB1	chr15:57025211-57026140	K562	blood:	n/a	n/a
11	SP1	chr15:57025500-57026286	A549	lung:	n/a	chr15:57025885-57025896 chr15:57025973-57025987
12	POLR2A	chr15:57024845-57026089	H1-hESC	embryonic stem cell:	n/a	n/a
13	ELK1	chr15:57025679-57026055	K562	blood:	n/a	n/a
14	POLR2A	chr15:57025103-57026153	A549	lung:	n/a	n/a
15	MAZ	chr15:57024895-57026200	GM12878	blood:	n/a	chr15:57025943-57025952
16	MYC	chr15:57025683-57026048	MCF-7	breast:	n/a	chr15:57025943-57025952
17	TEAD4	chr15:57025632-57026376	K562	blood:	n/a	n/a
18	MXI1	chr15:57024920-57026093	GM12878	blood:	n/a	n/a
19	MYC	chr15:57024000-57026500	A549	lung:	n/a	chr15:57025943-57025952
20	MAX	chr15:57024947-57026210	K562	blood:	n/a	chr15:57025943-57025952
21	TAF1	chr15:57025090-57026079	MCF-7	breast:	n/a	n/a
22	MAX	chr15:57024851-57026325	MCF-7	breast:	n/a	chr15:57025943-57025952
23	E2F6	chr15:57025107-57026170	K562	blood:	n/a	chr15:57025488-57025498 chr15:57025541-57025550 chr15:57025808-57025818 chr15:57025866-57025881
24	MYC	chr15:57025017-57026082	K562	blood:	n/a	chr15:57025943-57025952
25	POLR2A	chr15:57024919-57026071	GM15510	blood:	n/a	n/a
26	PML	chr15:57025306-57026067	MCF-7	breast:	n/a	n/a
27	STAT5A	chr15:57025580-57026096	K562	blood:	n/a	n/a
28	EGR1	chr15:57025085-57026155	HCT-116	colon:	n/a	chr15:57025509-57025522 chr15:57025506-57025520
29	TAF1	chr15:57024913-57026082	A549	lung:	n/a	n/a
30	TCF3	chr15:57025297-57026138	GM12878	blood:	n/a	n/a
31	BHLHE40	chr15:57025189-57026058	HepG2	liver:	n/a	chr15:57025607-57025623 chr15:57025481-57025497
32	GTF2F1	chr15:57024991-57026680	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr15:57024198-57026124	MCF10A-Er-Src	breast:	n/a	n/a
34	POLR2A	chr15:57024961-57026087	K562	blood:	n/a	n/a
35	POLR2A	chr15:57024075-57026130	SK-N-MC	brain:	n/a	n/a
36	POLR2A	chr15:57024484-57026123	HUVEC	blood vessel:	n/a	n/a
37	REST	chr15:57024535-57026141	H1-neurons	neurons:	n/a	chr15:57025608-57025621 chr15:57025368-57025381
38	E2F6	chr15:57024968-57026543	A549	lung:	n/a	chr15:57025488-57025498 chr15:57025541-57025550 chr15:57025808-57025818 chr15:57025866-57025881
39	SP1	chr15:57025624-57026107	K562	blood:	n/a	chr15:57025885-57025896 chr15:57025973-57025987
40	MXI1	chr15:57024763-57026365	IMR90	lung:	n/a	n/a
41	POLR2A	chr15:57024410-57026132	K562	blood:	n/a	n/a
42	POLR2A	chr15:57024898-57026085	GM18951	blood:	n/a	n/a
43	HDAC2	chr15:57025459-57026040	HepG2	liver:	n/a	n/a
44	ZNF143	chr15:57025230-57026057	K562	blood:	n/a	chr15:57025540-57025550 chr15:57025566-57025576 chr15:57025817-57025836 chr15:57025931-57025949 chr15:57025584-57025594
45	RCOR1	chr15:57025183-57026050	HepG2	liver:	n/a	n/a
46	USF1	chr15:57025641-57026125	ECC-1	luminal epithelium:	n/a	n/a
47	POLR2A	chr15:57025235-57026079	HUVEC	blood vessel:	n/a	n/a
48	RCOR1	chr15:57024878-57026141	K562	blood:	n/a	n/a
49	BHLHE40	chr15:57025178-57026089	GM12878	blood:	n/a	chr15:57025607-57025623 chr15:57025481-57025497
50	POLR2A	chr15:57024880-57026112	GM12892	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:57026014-57026064	SK-N-MC	brain:	n/a
2	chr15:57026014-57026064	HNPCEpiC	eye:	n/a
3	chr15:57026014-57026064	SKMC	muscle:	n/a
4	chr15:57026014-57026064	Jurkat	blood:	n/a
5	chr15:57026014-57026064	AG04449	skin:	fetal
6	chr15:57026014-57026064	K562	blood:	n/a
7	chr15:57026014-57026064	AG04450	lung:	fetal
8	chr15:57026014-57026064	RPTEC	kidney:	n/a
9	chr15:57026014-57026064	NT2-D1	testis:	n/a
10	chr15:57026014-57026064	IMR90	lung:	fetal
11	chr15:57026014-57026064	HL-60	blood:	n/a
12	chr15:57026014-57026064	PFSK-1	brain:	n/a
13	chr15:57026014-57026064	MCF10A-Er-Src	breast:	n/a
14	chr15:57026014-57026064	SAEC	small airway:	n/a
15	chr15:57026014-57026064	GM12891	blood:	n/a
16	chr15:57026014-57026064	HepG2	liver:	n/a
17	chr15:57026014-57026064	HCPEpiC	choroid plexus:	n/a
18	chr15:57026014-57026064	AG09309	skin:	n/a
19	chr15:57026014-57026064	HEK293	kidney:	embryo
20	chr15:57026014-57026064	HIPEpiC	eye:	n/a
21	chr15:57026014-57026064	HUVEC	blood vessel:	n/a
22	chr15:57026014-57026064	ovcar-3	ovarian:	n/a
23	chr15:57026014-57026064	NH-A	brain:	n/a
24	chr15:57026014-57026064	T-47D	breast:	n/a
25	chr15:57026014-57026064	NHBE	bronchial:	n/a
26	chr15:57026014-57026064	PrEC	prostate:	n/a
27	chr15:57026014-57026064	LNCaP	prostate:	n/a
28	chr15:57026014-57026064	PANC-1	pancreas:	n/a
29	chr15:57026014-57026064	ProgFib	skin:	n/a
30	chr15:57026014-57026064	HAEpiC	amniotic membrane:	n/a
31	chr15:57026014-57026064	U87	brain:	n/a
32	chr15:57026014-57026064	HRCEpiC	kidney:	n/a
33	chr15:57026014-57026064	ECC-1	luminal epithelium:	n/a
34	chr15:57026014-57026064	GM12892	blood:	n/a
35	chr15:57026014-57026064	HPAEpiC	pulmonary alveolar:	n/a
36	chr15:57026014-57026064	CMK	blood:	n/a
37	chr15:57026014-57026064	HCM	heart:	n/a
38	chr15:57026014-57026064	GM06990	blood:	n/a
39	chr15:57026014-57026064	HRE	kidney:	n/a
40	chr15:57026014-57026064	MCF-7	breast:	n/a
41	chr15:57026014-57026064	Hela-S3	cervix:	n/a
42	chr15:57026014-57026064	Hepatocyte	liver:	n/a
43	chr15:57026014-57026064	NHDF-neo	bronchial:	n/a
44	chr15:57026014-57026064	HCT-116	colon:	n/a
45	chr15:57026014-57026064	SK-N-SH	brain:	n/a
46	chr15:57026014-57026064	GM12878	blood:	n/a
47	chr15:57026014-57026064	AG10803	skin:	n/a
48	chr15:57026014-57026064	HEEpiC	esophagus:	n/a
49	chr15:57026014-57026064	GM19239	blood:	n/a
50	chr15:57026014-57026064	BJ	skin:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:57024542..57026335-chr15:57210196..57212175,2	K562	blood:
2	chr15:57023111..57027218-chr15:57209095..57213054,4	K562	blood:
3	chr15:56534684..56537162-chr15:57025486..57027553,2	MCF-7	breast:
4	chr15:57022824..57027100-chr15:57611258..57614634,3	K562	blood:
5	chr1:149223243..149225441-chr15:57024407..57026352,2	MCF-7	breast:
6	chr15:56997588..56999927-chr15:57024317..57027282,2	K562	blood:
7	chr15:57023339..57026885-chr15:57210242..57212303,3	MCF-7	breast:

Variant related genes	Relation type
ZNF280D	TF binding region
ZNF280D	CpG island
ENSG00000206737	Chromatin interaction
ENSG00000260172	Chromatin interaction
ENSG00000140262	Chromatin interaction
ENSG00000181827	Chromatin interaction
ENSG00000151575	Chromatin interaction
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3449418	chr15:57024810-57026908	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57024200-57026200	Active TSS	Aorta	Aorta
2	chr15:57024200-57026200	Active TSS	Ovary	ovary
3	chr15:57024200-57026200	Active TSS	Psoas Muscle	Psoas
4	chr15:57024200-57026400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:57024400-57026200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:57024400-57026400	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr15:57024600-57026200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:57024600-57026200	Active TSS	Brain Germinal Matrix	brain
9	chr15:57024600-57026400	Active TSS	Brain Anterior Caudate	brain
10	chr15:57024600-57026400	Active TSS	Brain Substantia Nigra	brain
11	chr15:57024800-57026200	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr15:57024800-57026200	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr15:57024800-57026200	Active TSS	Brain Cingulate Gyrus	brain
14	chr15:57024800-57026200	Active TSS	Brain Hippocampus Middle	brain
15	chr15:57024800-57026200	Active TSS	Colon Smooth Muscle	Colon
16	chr15:57024800-57026200	Active TSS	Duodenum Mucosa	Duodenum
17	chr15:57024800-57026400	Active TSS	Liver	Liver
18	chr15:57024800-57026400	Active TSS	Brain Angular Gyrus	brain
19	chr15:57024800-57026400	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr15:57024800-57026400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:57024800-57026400	Active TSS	Fetal Brain Female	brain
22	chr15:57024800-57026400	Active TSS	Fetal Kidney	kidney
23	chr15:57024800-57026400	Active TSS	Fetal Lung	lung
24	chr15:57024800-57026400	Active TSS	HSMMtube	muscle
25	chr15:57024800-57026800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr15:57025000-57026200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:57025000-57026200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:57025000-57026200	Active TSS	Gastric	stomach
29	chr15:57025000-57026200	Active TSS	Small Intestine	intestine
30	chr15:57025200-57026200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr15:57025200-57026400	Active TSS	Primary T cells from cord blood	blood
32	chr15:57025400-57026200	Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr15:57025400-57026200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:57025400-57026200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr15:57025400-57026200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:57025400-57026400	Active TSS	Primary B cells from cord blood	blood
37	chr15:57025600-57026400	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr15:57025800-57026200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:57025800-57026200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:57025800-57026200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:57025800-57026200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:57025800-57026200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr15:57025800-57026200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr15:57025800-57026200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:57025800-57026200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:57025800-57026200	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr15:57025800-57026200	Flanking Active TSS	Colonic Mucosa	Colon
48	chr15:57025800-57026200	Flanking Active TSS	Esophagus	oesophagus
49	chr15:57025800-57026200	Flanking Active TSS	Left Ventricle	heart
50	chr15:57025800-57026200	Flanking Active TSS	Pancreas	Pancrea

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