Variant report
| Variant | rs570883600 |
|---|---|
| Chromosome Location | chr7:19815430-19815431 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:17)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:17 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr7:19815244-19815629 | HCT-116 | colon: | n/a | chr7:19815404-19815423 |
| 2 | CTCF | chr7:19815352-19815467 | Hela-S3 | cervix: | n/a | chr7:19815401-19815422 chr7:19815406-19815424 |
| 3 | CTCF | chr7:19815421-19815476 | Medullo | brain: | n/a | n/a |
| 4 | CTCF | chr7:19815420-19815570 | HCM | heart: | n/a | n/a |
| 5 | CTCF | chr7:19815340-19815490 | HMF | breast: | n/a | chr7:19815401-19815422 chr7:19815406-19815424 |
| 6 | CTCF | chr7:19815399-19815433 | LNCaP | prostate: | n/a | chr7:19815401-19815422 chr7:19815406-19815424 |
| 7 | CTCF | chr7:19815340-19815490 | HMEC | breast: | n/a | chr7:19815401-19815422 chr7:19815406-19815424 |
| 8 | CTCF | chr7:19815300-19815450 | RPTEC | kidney: | n/a | chr7:19815401-19815422 chr7:19815406-19815424 |
| 9 | CTCF | chr7:19815280-19815430 | BE2_C | brain: | n/a | chr7:19815401-19815422 chr7:19815406-19815424 |
| 10 | CTCF | chr7:19815400-19815550 | MCF-7 | breast: | n/a | chr7:19815401-19815422 chr7:19815406-19815424 |
| 11 | CTCF | chr7:19815340-19815490 | HRPEpiC | eye: | n/a | chr7:19815401-19815422 chr7:19815406-19815424 |
| 12 | CTCF | chr7:19815300-19815450 | HCPEpiC | choroid plexus: | n/a | chr7:19815401-19815422 chr7:19815406-19815424 |
| 13 | CTCF | chr7:19815362-19815455 | MCF-7 | breast: | n/a | chr7:19815401-19815422 chr7:19815406-19815424 |
| 14 | CTCF | chr7:19815380-19815530 | HRPEpiC | eye: | n/a | chr7:19815401-19815422 chr7:19815406-19815424 |
| 15 | CTCF | chr7:19815349-19815463 | LNCaP | prostate: | n/a | chr7:19815401-19815422 chr7:19815406-19815424 |
| 16 | CTCF | chr7:19815380-19815530 | HPF | lung: | n/a | chr7:19815401-19815422 chr7:19815406-19815424 |
| 17 | RAD21 | chr7:19815324-19815574 | A549 | lung: | n/a | chr7:19815404-19815423 |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:19814760..19817027-chr7:19818630..19820862,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| TMEM196 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018601 | chr7:19272360-20008881 | Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033223 | chr7:19682192-20461375 | Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 3 | nsv538795 | chr7:19682192-20461375 | Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 4 | nsv830918 | chr7:19747674-19914527 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 5 | esv1847477 | chr7:19778086-19970584 | Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 6 | nsv971524 | chr7:19814693-19827964 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:19814800-19815600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
