Variant report

Variant	rs570902399
Chromosome Location	chr15:93152223-93152224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93138971..93141696-chr15:93151230..93154019,2	MCF-7	breast:
2	chr15:93145822..93150486-chr15:93150497..93155016,6	K562	blood:
3	chr15:93151753..93155694-chr15:93155809..93157941,4	MCF-7	breast:
4	chr15:93150012..93154507-chr15:93196255..93200347,4	MCF-7	breast:
5	chr15:93146362..93148233-chr15:93152029..93154921,2	K562	blood:

Variant related genes	Relation type
ENSG00000260337	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000271763	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
6	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv10575	chr15:93151497-93152457	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93139400-93159800	Weak transcription	Fetal Lung	lung
2	chr15:93142200-93156400	Weak transcription	Lung	lung
3	chr15:93142200-93160400	Weak transcription	Right Atrium	heart
4	chr15:93142400-93152400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:93143600-93160000	Weak transcription	Right Ventricle	heart
6	chr15:93146800-93160000	Weak transcription	Psoas Muscle	Psoas
7	chr15:93147000-93152400	Weak transcription	Esophagus	oesophagus
8	chr15:93150000-93153200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:93150000-93153200	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:93150000-93153600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:93150000-93155600	Weak transcription	Pancreas	Pancrea
12	chr15:93150000-93160600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:93150200-93157000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:93150400-93156200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:93150400-93156400	Weak transcription	Fetal Stomach	stomach
16	chr15:93151200-93157200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:93151200-93160200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:93151400-93157600	Weak transcription	Fetal Intestine Small	intestine
19	chr15:93151400-93167400	Weak transcription	Brain Germinal Matrix	brain
20	chr15:93151600-93152800	Weak transcription	Gastric	stomach
21	chr15:93151600-93158600	Weak transcription	HSMMtube	muscle
22	chr15:93151600-93159600	Weak transcription	HSMM	muscle
23	chr15:93151600-93178000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:93151800-93155600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr15:93152200-93153000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:93152200-93153000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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