Variant report

Variant	rs570904004
Chromosome Location	chr16:79881817-79881818
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv573291	chr16:79881386-79931595	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79876000-79882400	Weak transcription	Fetal Lung	lung
2	chr16:79879200-79882400	Weak transcription	Fetal Stomach	stomach
3	chr16:79879600-79885200	Enhancers	Thymus	Thymus
4	chr16:79879800-79884600	Enhancers	Fetal Thymus	thymus
5	chr16:79880000-79883400	Weak transcription	Primary T cells from cord blood	blood
6	chr16:79880400-79882600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr16:79880600-79884800	Enhancers	NHEK	skin
8	chr16:79880800-79882200	Enhancers	Duodenum Mucosa	Duodenum
9	chr16:79880800-79882800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr16:79880800-79883600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr16:79880800-79885200	Enhancers	Colon Smooth Muscle	Colon
12	chr16:79881400-79882800	Weak transcription	Fetal Intestine Large	intestine
13	chr16:79881400-79882800	Weak transcription	Placenta	Placenta
14	chr16:79881400-79883200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr16:79881600-79882600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr16:79881600-79883000	Weak transcription	GM12878-XiMat	blood
17	chr16:79881800-79882200	Weak transcription	Esophagus	oesophagus
18	chr16:79881800-79882200	Weak transcription	K562	blood
19	chr16:79881800-79883000	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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