Variant report

Variant	rs570910922
Chromosome Location	chr11:34079211-34079212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34077456..34080361-chr11:34145173..34147972,2	MCF-7	breast:
2	chr11:34078306..34080803-chr11:34146399..34149282,2	K562	blood:
3	chr11:34072006..34079358-chr11:34124269..34129390,19	K562	blood:

Variant related genes	Relation type
ENSG00000135372	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976485	chr11:34078142-34082109	Strong transcription Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34075400-34087000	Weak transcription	Gastric	stomach
2	chr11:34075400-34094200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:34075400-34094400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:34075400-34103800	Weak transcription	Aorta	Aorta
5	chr11:34075600-34079400	Weak transcription	Psoas Muscle	Psoas
6	chr11:34075600-34082600	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr11:34075600-34082600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr11:34075600-34082800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr11:34075600-34088400	Weak transcription	Right Atrium	heart
10	chr11:34075600-34093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:34075600-34100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:34075800-34079600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr11:34075800-34083400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:34075800-34093600	Weak transcription	HSMMtube	muscle
15	chr11:34076200-34081400	Strong transcription	HSMM	muscle
16	chr11:34076200-34089400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:34076400-34079600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
18	chr11:34076600-34079600	Enhancers	Fetal Brain Male	brain
19	chr11:34076600-34080200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:34076800-34080200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:34077000-34100600	Weak transcription	Esophagus	oesophagus
22	chr11:34077200-34080400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:34077200-34081400	Weak transcription	Lung	lung
24	chr11:34077200-34081600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr11:34077200-34081600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr11:34077200-34082800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:34077200-34082800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:34077200-34082800	Weak transcription	Fetal Stomach	stomach
29	chr11:34077200-34082800	Weak transcription	Left Ventricle	heart
30	chr11:34077200-34082800	Weak transcription	Right Ventricle	heart
31	chr11:34077200-34082800	Weak transcription	Thymus	Thymus
32	chr11:34077200-34083000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:34077200-34083000	Weak transcription	Spleen	Spleen
34	chr11:34077200-34084800	Weak transcription	Pancreas	Pancrea
35	chr11:34077200-34087800	Strong transcription	Fetal Thymus	thymus
36	chr11:34077200-34088600	Weak transcription	Ovary	ovary
37	chr11:34077400-34080200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:34077400-34082600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr11:34077400-34083200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:34077400-34089200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:34077400-34090200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:34077400-34094800	Weak transcription	Colonic Mucosa	Colon
43	chr11:34077600-34080400	Enhancers	HepG2	liver
44	chr11:34078000-34079400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:34078200-34080400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:34078200-34082200	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr11:34078200-34084000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:34078200-34087800	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:34078200-34092000	Weak transcription	Stomach Mucosa	stomach
50	chr11:34078400-34079400	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links