Variant report

Variant	rs570920002
Chromosome Location	chr15:73976098-73976099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:73975982-73976232	MCF-7	breast:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
2	CTCF	chr15:73976018-73976221	T-47D	breast:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
3	CTCF	chr15:73976000-73976150	HMEC	breast:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
4	RFX5	chr15:73975605-73976782	Hela-S3	cervix:	n/a	n/a
5	CTCF	chr15:73976020-73976170	BE2_C	brain:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
6	RFX5	chr15:73975958-73976423	HepG2	liver:	n/a	n/a
7	CTCF	chr15:73975960-73976110	WI-38	lung:	n/a	chr15:73976103-73976110
8	CTCF	chr15:73976000-73976150	SAEC	small airway:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
9	MAFK	chr15:73976030-73976195	HepG2	liver:	n/a	n/a
10	HDAC2	chr15:73975962-73976708	MCF-7	breast:	n/a	chr15:73976191-73976205 chr15:73976190-73976204 chr15:73975990-73976009
11	CTCF	chr15:73976040-73976190	HCPEpiC	choroid plexus:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
12	CTCF	chr15:73976002-73976218	GM10248	blood:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
13	POLR2A	chr15:73976037-73976875	HCT-116	colon:	n/a	n/a
14	TCF12	chr15:73975996-73976400	A549	lung:	n/a	n/a
15	TBP	chr15:73975961-73976923	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr15:73976019-73976196	GM10266	blood:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
17	CTCF	chr15:73976013-73976214	Pancreas_OC	pancreas:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
18	MAZ	chr15:73975912-73977192	K562	blood:	n/a	n/a
19	POLR2A	chr15:73975934-73976813	SK-N-SH	brain:	n/a	n/a
20	CTCF	chr15:73975995-73976213	MCF-7	breast:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
21	CTCF	chr15:73975926-73976322	IMR90	lung:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
22	CTCF	chr15:73976040-73976190	HMF	breast:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
23	CTCF	chr15:73975960-73976110	HPF	lung:	n/a	chr15:73976103-73976110
24	ELF1	chr15:73976011-73976278	K562	blood:	n/a	chr15:73976194-73976205
25	CTCF	chr15:73976060-73976210	HUVEC	blood vessel:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
26	RCOR1	chr15:73975733-73976333	HepG2	liver:	n/a	n/a
27	CHD2	chr15:73976054-73976563	HepG2	liver:	n/a	n/a
28	ZNF143	chr15:73975748-73976325	K562	blood:	n/a	n/a
29	REST	chr15:73975721-73978190	H1-neurons	neurons:	n/a	chr15:73976590-73976603 chr15:73977028-73977041 chr15:73976851-73976864 chr15:73976907-73976920 chr15:73976087-73976096
30	CTCF	chr15:73975872-73976492	HCT-116	colon:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
31	USF2	chr15:73976094-73976561	Hela-S3	cervix:	n/a	n/a
32	CTCF	chr15:73976040-73976190	MCF-7	breast:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
33	CTCF	chr15:73976016-73976271	SK-N-SH_RA	brain:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
34	CHD2	chr15:73975999-73976520	H1-hESC	embryonic stem cell:	n/a	n/a
35	POLR2A	chr15:73975950-73977872	H1-neurons	neurons:	n/a	n/a
36	CTCF	chr15:73976000-73976150	GM12871	blood:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
37	GTF2F1	chr15:73975942-73976475	Hela-S3	cervix:	n/a	n/a
38	MYC	chr15:73976096-73976220	MCF-7	breast:	n/a	n/a
39	RAD21	chr15:73975895-73976402	ECC-1	luminal epithelium:	n/a	chr15:73976101-73976110 chr15:73976155-73976165 chr15:73976100-73976119
40	CTCF	chr15:73975994-73976195	LNCaP	prostate:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
41	CTCF	chr15:73975873-73976274	H1-hESC	embryonic stem cell:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
42	CTCF	chr15:73976040-73976190	AG10803	skin:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
43	CTCF	chr15:73976020-73976170	AG09309	skin:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
44	CTCF	chr15:73976040-73976190	SK-N-SH_RA	brain:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
45	CTCF	chr15:73976060-73976210	AG04449	skin:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
46	REST	chr15:73976032-73976553	PFSK-1	brain:	n/a	chr15:73976087-73976096
47	CTCF	chr15:73976040-73976190	NHDF-neo	bronchial:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
48	CTCF	chr15:73975836-73976345	MCF-7	breast:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
49	BACH1	chr15:73976084-73976509	H1-hESC	embryonic stem cell:	n/a	n/a
50	MAX	chr15:73975961-73976976	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:73923335..73928580-chr15:73974636..73980559,10	MCF-7	breast:
2	chr15:73975489..73977527-chr15:73994222..73997098,2	MCF-7	breast:
3	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:
4	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:

Variant related genes	Relation type
CD276	TF binding region
ENSG00000156642	Chromatin interaction
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3434440	chr15:73975149-73978997	Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3341618	chr15:73975424-73978272	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73972000-73977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:73972200-73976200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:73974200-73976200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr15:73974400-73976200	Enhancers	HSMM	muscle
5	chr15:73974400-73976200	Enhancers	HSMMtube	muscle
6	chr15:73975000-73976200	Weak transcription	Left Ventricle	heart
7	chr15:73975600-73976200	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr15:73975600-73976200	Bivalent Enhancer	Stomach Mucosa	stomach
9	chr15:73975600-73976400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:73975600-73976400	Enhancers	Fetal Heart	heart
11	chr15:73975800-73976200	Flanking Active TSS	Brain Germinal Matrix	brain
12	chr15:73975800-73976200	Flanking Active TSS	Brain Hippocampus Middle	brain
13	chr15:73975800-73976200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr15:73975800-73976200	Flanking Bivalent TSS/Enh	HepG2	liver
15	chr15:73975800-73976200	Enhancers	HMEC	breast
16	chr15:73975800-73976400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:73975800-73976400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:73975800-73976400	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr15:73975800-73976400	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr15:73975800-73976400	Flanking Active TSS	Fetal Brain Female	brain
21	chr15:73975800-73976400	Flanking Active TSS	Fetal Intestine Small	intestine
22	chr15:73975800-73976400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr15:73975800-73976400	Flanking Active TSS	Osteobl	bone
24	chr15:73975800-73976800	Enhancers	Spleen	Spleen
25	chr15:73975800-73977000	Active TSS	Brain Cingulate Gyrus	brain
26	chr15:73975800-73977200	Enhancers	Fetal Brain Male	brain
27	chr15:73975800-73978000	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr15:73975800-73978000	Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr15:73975800-73978200	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr15:73975800-73978200	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr15:73976000-73976200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:73976000-73976200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:73976000-73976200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:73976000-73976200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:73976000-73976200	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr15:73976000-73976200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:73976000-73976200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
38	chr15:73976000-73976200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:73976000-73976200	Flanking Active TSS	Brain Angular Gyrus	brain
40	chr15:73976000-73976200	Active TSS	Brain Substantia Nigra	brain
41	chr15:73976000-73976200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr15:73976000-73976200	Enhancers	Gastric	stomach
43	chr15:73976000-73976200	Enhancers	Lung	lung
44	chr15:73976000-73976200	Enhancers	Ovary	ovary
45	chr15:73976000-73976200	Flanking Active TSS	Right Atrium	heart
46	chr15:73976000-73976200	Bivalent Enhancer	GM12878-XiMat	blood
47	chr15:73976000-73976200	Active TSS	Hela-S3	cervix
48	chr15:73976000-73976400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
49	chr15:73976000-73976400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:73976000-73976400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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