Variant report

Variant	rs57101510
Chromosome Location	chr2:173162381-173162382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10930540	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10930541	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10930542	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10930545	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10930547	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11674489	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11674629	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11674681	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11677934	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11677943	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11685584	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12624040	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13384490	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429441	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4438453	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4447582	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4450575	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4538169	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4594405	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4619572	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4972477	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4972774	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4972775	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55893326	0.85[EUR][1000 genomes]
rs56239652	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7425702	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3034	chr2:173160295-173200113	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173151400-173168000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:173159200-173164400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:173159200-173164600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:173159400-173164200	Weak transcription	HMEC	breast
5	chr2:173160400-173162400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
6	chr2:173160400-173162600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:173160400-173162800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr2:173160600-173162400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:173160600-173162600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr2:173160600-173162600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr2:173160600-173162600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:173160600-173163200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr2:173161000-173162400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr2:173161000-173163200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr2:173161200-173172600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:173161400-173172200	Weak transcription	Right Atrium	heart
17	chr2:173161600-173162800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:173161600-173165800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr2:173161800-173164400	Weak transcription	NHEK	skin
20	chr2:173162000-173162400	Enhancers	Primary hematopoietic stem cells	blood
21	chr2:173162000-173162400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:173162000-173162800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:173162000-173162800	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr2:173162200-173162400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr2:173162200-173162400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr2:173162200-173162600	Enhancers	Ovary	ovary
27	chr2:173162200-173162800	Enhancers	Pancreas	Pancrea
28	chr2:173162200-173163600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr2:173162200-173164400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:173162200-173164800	Enhancers	HSMMtube	muscle

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