Variant report

Variant	rs57104142
Chromosome Location	chr6:291291-291292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr6:290476-293455	IMR90	lung:	n/a	chr6:292737-292747 chr6:292682-292692 chr6:292941-292951
2	MXI1	chr6:290985-293239	IMR90	lung:	n/a	n/a
3	HCFC1	chr6:291265-293566	K562	blood:	n/a	n/a
4	ELF1	chr6:291138-293818	GM12878	blood:	n/a	chr6:292755-292766 chr6:292979-292990 chr6:292756-292765
5	NRF1	chr6:291225-292647	GM12878	blood:	n/a	chr6:291996-292007 chr6:292448-292457 chr6:291996-292007 chr6:292203-292212 chr6:292246-292255 chr6:292059-292070 chr6:291993-292007 chr6:292488-292502 chr6:292022-292033 chr6:292060-292074 chr6:292060-292071 chr6:292060-292069 chr6:291998-292007
6	RELA	chr6:291181-292041	GM18526	blood:	n/a	chr6:291771-291780 chr6:291771-291780
7	IRF4	chr6:291081-292031	GM12878	blood:	n/a	n/a
8	BHLHE40	chr6:290227-293958	GM12878	blood:	n/a	chr6:292116-292132 chr6:292618-292634 chr6:291995-292011
9	FOS	chr6:291278-291786	MCF10A-Er-Src	breast:	n/a	chr6:291700-291709
10	MTA3	chr6:289889-299415	GM12878	blood:	n/a	n/a
11	STAT5A	chr6:290201-294485	GM12878	blood:	n/a	chr6:292443-292455 chr6:292937-292949 chr6:292169-292177 chr6:294081-294089
12	BATF	chr6:291187-292336	GM12878	blood:	n/a	chr6:291698-291708
13	POLR2A	chr6:291239-293576	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr6:290439-294956	GM18505	blood:	n/a	n/a
15	BCL3	chr6:291125-292019	GM12878	blood:	n/a	chr6:291951-291964 chr6:291664-291677
16	STAT3	chr6:290189-291936	GM12878	blood:	n/a	n/a
17	YY1	chr6:291108-293744	GM12878	blood:	n/a	chr6:292771-292782 chr6:292122-292133 chr6:292449-292460 chr6:291757-291768 chr6:292246-292255
18	MYBL2	chr6:291072-291971	HepG2	liver:	n/a	n/a
19	POLR2A	chr6:290181-294500	GM12892	blood:	n/a	n/a
20	CHD1	chr6:290233-299250	GM12878	blood:	n/a	chr6:292446-292456 chr6:292304-292314
21	POLR2A	chr6:290365-294089	GM12878	blood:	n/a	n/a
22	RUNX3	chr6:291066-294163	GM12878	blood:	n/a	n/a
23	RAD21	chr6:291104-293902	GM12878	blood:	n/a	chr6:292768-292781
24	CREB1	chr6:291190-293791	HepG2	liver:	n/a	n/a
25	ZNF143	chr6:290415-293754	GM12878	blood:	n/a	chr6:292182-292200 chr6:292203-292213 chr6:293262-293272 chr6:292936-292946 chr6:292113-292131
26	ATF2	chr6:290519-292253	GM12878	blood:	n/a	n/a
27	RELA	chr6:289010-294054	GM10847	blood:	n/a	chr6:289700-289709 chr6:291771-291780 chr6:291771-291780 chr6:289700-289709
28	RCOR1	chr6:291145-294426	GM12878	blood:	n/a	n/a
29	MAX	chr6:290452-293836	GM12878	blood:	n/a	chr6:292737-292747 chr6:292682-292692 chr6:292941-292951
30	POLR2A	chr6:291288-293182	K562	blood:	n/a	n/a
31	RFX5	chr6:291255-293363	Hela-S3	cervix:	n/a	chr6:293326-293335
32	IRF4	chr6:291137-291874	GM12878	blood:	n/a	n/a
33	FOS	chr6:291228-291854	MCF10A-Er-Src	breast:	n/a	chr6:291700-291709
34	PML	chr6:289892-294504	GM12878	blood:	n/a	n/a
35	POLR2A	chr6:290516-294407	GM18526	blood:	n/a	n/a
36	POLR2A	chr6:290109-298210	GM12878	blood:	n/a	n/a
37	FOXM1	chr6:290100-294528	GM12878	blood:	n/a	chr6:290888-290896
38	USF2	chr6:291166-292445	GM12878	blood:	n/a	chr6:292116-292132 chr6:291995-292011
39	POLR2A	chr6:291200-293779	GM10847	blood:	n/a	n/a
40	POLR2A	chr6:290417-294519	GM12892	blood:	n/a	n/a
41	POLR2A	chr6:290318-294342	GM18951	blood:	n/a	n/a
42	POLR2A	chr6:291069-293781	GM12878	blood:	n/a	n/a
43	ZMIZ1	chr6:291067-292278	K562	blood:	n/a	n/a
44	TAF1	chr6:291063-294042	GM12878	blood:	n/a	n/a
45	POLR2A	chr6:290020-297280	GM12892	blood:	n/a	n/a
46	RELA	chr6:290168-294012	GM19193	blood:	n/a	chr6:291771-291780 chr6:291771-291780
47	SP1	chr6:291170-293321	GM12878	blood:	n/a	chr6:292736-292745 chr6:292245-292257 chr6:292681-292693 chr6:292245-292257 chr6:292678-292692 chr6:292202-292214 chr6:292735-292749 chr6:292247-292256 chr6:292246-292255 chr6:292681-292693 chr6:292247-292256 chr6:292342-292356
48	POLR2A	chr6:291140-293009	K562	blood:	n/a	n/a
49	POLR2A	chr6:290507-294874	GM15510	blood:	n/a	n/a
50	MXI1	chr6:291173-293769	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:49658539..49660530-chr6:290672..293249,2	MCF-7	breast:

Variant related genes	Relation type
DUSP22	TF binding region
ENSG00000167553	Chromatin interaction
ENSG00000258101	Chromatin interaction

Extended variants
information (count: 462 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1775599	0.86[AMR][1000 genomes]
rs59937175	0.89[AMR][1000 genomes]
rs6914264	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs815574	0.92[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs815576	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs815577	0.81[ASN][1000 genomes]
rs815578	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:455 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428134	chr6:60001-653718	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv2758034	chr6:60001-775274	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv2759401	chr6:60001-775274	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv1015256	chr6:149649-336797	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1025116	chr6:149649-381137	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv529144	chr6:163083-293493	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv533803	chr6:163083-307998	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	nsv531999	chr6:163083-588213	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv1067791	chr6:163083-919234	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	nsv497978	chr6:163083-919234	ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
11	nsv492217	chr6:164360-293497	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
12	esv2752087	chr6:165391-367109	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
13	esv2752759	chr6:165391-367109	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
14	nsv432824	chr6:165391-367109	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
15	nsv432823	chr6:165391-516350	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv1024273	chr6:170425-510748	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
17	nsv538028	chr6:170425-510748	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
18	nsv1032462	chr6:170425-766201	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
19	nsv538029	chr6:170425-766201	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
20	nsv1032314	chr6:175479-328345	Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
21	nsv462597	chr6:175522-311938	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
22	nsv600740	chr6:175522-311938	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
23	nsv1026847	chr6:176684-395798	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
24	nsv821644	chr6:182761-411478	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
25	nsv1021705	chr6:183203-295223	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
26	nsv1018449	chr6:183203-303257	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
27	nsv538038	chr6:183203-370470	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
28	nsv538039	chr6:183203-376106	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
29	nsv1019126	chr6:183203-432978	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
30	nsv1032052	chr6:183203-438513	Weak transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
31	nsv538040	chr6:183203-438513	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
32	nsv1020955	chr6:183203-447098	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
33	nsv1034909	chr6:183203-464651	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
34	nsv1034089	chr6:183203-714494	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
35	nsv538050	chr6:195438-390520	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
36	nsv1026841	chr6:195438-447098	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
37	nsv538051	chr6:195438-447098	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
38	esv2757151	chr6:217334-411954	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
39	nsv491950	chr6:221768-339802	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
40	nsv491823	chr6:229815-293493	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
41	nsv538053	chr6:230804-757589	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
42	nsv1028184	chr6:231934-376925	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
43	nsv1022334	chr6:231934-395798	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
44	nsv830568	chr6:232604-411249	Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
45	nsv432825	chr6:233750-384546	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
46	esv32812	chr6:236171-378927	Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
47	nsv1030488	chr6:237215-303121	ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
48	nsv462599	chr6:237215-311938	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
49	nsv600746	chr6:237215-311938	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
50	nsv1033008	chr6:237215-350608	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:281800-291400	Weak transcription	Right Atrium	heart
2	chr6:285400-291400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:289400-291800	Flanking Active TSS	GM12878-XiMat	blood
4	chr6:289800-291400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:290400-291800	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr6:290600-291400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:290600-291400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr6:290600-291400	Enhancers	Fetal Intestine Large	intestine
9	chr6:290600-291400	Enhancers	Fetal Intestine Small	intestine
10	chr6:290600-291400	Enhancers	Fetal Thymus	thymus
11	chr6:290600-291400	Enhancers	Psoas Muscle	Psoas
12	chr6:290600-291600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr6:290600-291600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr6:290600-291600	Enhancers	Esophagus	oesophagus
15	chr6:290600-291600	Enhancers	Gastric	stomach
16	chr6:290600-291600	Enhancers	Small Intestine	intestine
17	chr6:290600-291800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:290600-292000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr6:290600-292000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:290600-292000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr6:290600-293800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:290800-291400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr6:290800-291400	Active TSS	Fetal Brain Male	brain
24	chr6:290800-292000	ZNF genes & repeats	Lung	lung
25	chr6:290800-292400	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr6:291000-291400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:291000-291400	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr6:291000-291400	Enhancers	Stomach Mucosa	stomach
29	chr6:291000-291600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:291000-291800	Flanking Active TSS	NHEK	skin
31	chr6:291000-292000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr6:291000-292000	Flanking Active TSS	Primary B cells from peripheral blood	blood
33	chr6:291000-292000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr6:291200-291400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
35	chr6:291200-291400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:291200-291400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:291200-291400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr6:291200-291400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:291200-291400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:291200-291400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:291200-291400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
42	chr6:291200-291400	Enhancers	Brain Substantia Nigra	brain
43	chr6:291200-291400	Flanking Active TSS	Colonic Mucosa	Colon
44	chr6:291200-291400	Enhancers	Colon Smooth Muscle	Colon
45	chr6:291200-291400	Flanking Active TSS	Duodenum Mucosa	Duodenum
46	chr6:291200-291400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr6:291200-291400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr6:291200-291400	Enhancers	Fetal Brain Female	brain
49	chr6:291200-291400	Enhancers	Fetal Heart	heart
50	chr6:291200-291400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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