Variant report

Variant	rs571048972
Chromosome Location	chr17:37950966-37950967
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37945354..37947914-chr17:37949884..37951976,2	K562	blood:
2	chr17:37939870..37942689-chr17:37949107..37950989,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv3449742	chr17:37950718-37951092	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37939000-37961800	Weak transcription	Spleen	Spleen
2	chr17:37947800-37953400	Enhancers	Primary T cells fromperipheralblood	blood
3	chr17:37948400-37955400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr17:37948400-37956800	Weak transcription	Small Intestine	intestine
5	chr17:37948600-37951400	Enhancers	Duodenum Mucosa	Duodenum
6	chr17:37948800-37952000	Enhancers	Thymus	Thymus
7	chr17:37949400-37951800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:37949400-37952400	Enhancers	Primary B cells from peripheral blood	blood
9	chr17:37949800-37952600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr17:37949800-37952800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr17:37950000-37951800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr17:37950000-37952600	Enhancers	Fetal Thymus	thymus
13	chr17:37950000-37957000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:37950000-37957200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr17:37950000-37959400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr17:37950400-37951200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr17:37950400-37956800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr17:37950600-37951000	Enhancers	Stomach Mucosa	stomach
19	chr17:37950600-37951600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr17:37950600-37952800	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr17:37950600-37955400	Enhancers	Primary B cells from cord blood	blood
22	chr17:37950800-37951000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr17:37950800-37951600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr17:37950800-37951600	Enhancers	Dnd41	blood
25	chr17:37950800-37951600	Flanking Active TSS	GM12878-XiMat	blood
26	chr17:37950800-37956000	Enhancers	Primary T cells from cord blood	blood

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