Variant report

Variant	rs571064049
Chromosome Location	chr10:49969720-49969721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895374	chr10:49969556-49990081	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49962400-49980600	Strong transcription	Primary B cells from cord blood	blood
2	chr10:49967400-49971200	Strong transcription	Primary hematopoietic stem cells	blood
3	chr10:49967600-49977800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:49967600-50000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:49967800-49978200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:49967800-49979000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
8	chr10:49968000-49971400	Strong transcription	Spleen	Spleen
9	chr10:49968000-49974200	Weak transcription	Lung	lung
10	chr10:49968000-49977200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:49968200-49972000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:49968400-49971800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:49968600-49978600	Weak transcription	Adipose Nuclei	Adipose
14	chr10:49969000-49971800	Strong transcription	GM12878-XiMat	blood
15	chr10:49969200-49973800	Enhancers	Brain Germinal Matrix	brain
16	chr10:49969400-49989800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links