Variant report

Variant	rs571065547
Chromosome Location	chr9:21579523-21579524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:110268028..110268940-chr9:21579308..21579808,2	HCT-116	colon:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1015623	chr9:21579110-21694039	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21575800-21592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21577200-21585800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:21577400-21579600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr9:21578000-21579800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:21578400-21580800	Flanking Active TSS	A549	lung
6	chr9:21578600-21579600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr9:21578600-21579600	Enhancers	HUVEC	blood vessel
8	chr9:21578600-21579600	Flanking Active TSS	Osteobl	bone
9	chr9:21578600-21579800	Enhancers	NH-A	brain
10	chr9:21578600-21579800	Enhancers	NHEK	skin
11	chr9:21578800-21579600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:21578800-21579600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr9:21578800-21579600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr9:21578800-21579600	Enhancers	Thymus	Thymus
15	chr9:21578800-21579800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr9:21578800-21579800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:21578800-21579800	Flanking Active TSS	Hela-S3	cervix
18	chr9:21579000-21579600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:21579000-21579600	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr9:21579000-21579600	Enhancers	HMEC	breast
21	chr9:21579000-21580000	Enhancers	Stomach Mucosa	stomach
22	chr9:21579200-21579600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:21579200-21579600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:21579200-21579600	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr9:21579200-21579600	Enhancers	Fetal Intestine Small	intestine
26	chr9:21579200-21579800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr9:21579200-21579800	Enhancers	Dnd41	blood
28	chr9:21579200-21579800	Flanking Active TSS	NHDF-Ad	bronchial
29	chr9:21579200-21580800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr9:21579400-21579600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr9:21579400-21579600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:21579400-21579800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr9:21579400-21579800	Enhancers	NHLF	lung
34	chr9:21579400-21580000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr9:21579400-21580000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr9:21579400-21580000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr9:21579400-21580000	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr9:21579400-21580200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:21579400-21580600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:21579400-21582400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr9:21579400-21583000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:21579400-21590800	Weak transcription	HSMM	muscle

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