Variant report

Variant	rs57106784
Chromosome Location	chr15:33028815-33028816
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11854905	0.89[ASN][1000 genomes]
rs11857585	0.97[ASN][1000 genomes]
rs12050872	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1919360	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1919362	0.94[ASN][1000 genomes]
rs2123066	0.92[ASN][1000 genomes]
rs2141435	0.85[EUR][1000 genomes]
rs2141436	0.83[EUR][1000 genomes]
rs7166046	0.95[ASN][1000 genomes]
rs9635315	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv832961	chr15:33021177-33134988	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33023600-33029200	Strong transcription	Stomach Smooth Muscle	stomach
2	chr15:33023600-33035800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:33024200-33029200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:33025600-33037800	Weak transcription	HSMMtube	muscle
5	chr15:33025800-33035600	Weak transcription	HSMM	muscle
6	chr15:33027000-33029000	Strong transcription	Muscle Satellite Cultured Cells	--
7	chr15:33027000-33029200	Enhancers	Fetal Brain Male	brain
8	chr15:33027200-33030200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:33028400-33029000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:33028600-33029200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:33028600-33034000	Weak transcription	NH-A	brain
12	chr15:33028800-33029200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:33028800-33029200	Enhancers	NHDF-Ad	bronchial
14	chr15:33028800-33029200	Strong transcription	Osteobl	bone
15	chr15:33028800-33032000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links