Variant report

Variant	rs571089133
Chromosome Location	chr4:86894142-86894143
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86854200-86915800	Weak transcription	Left Ventricle	heart
2	chr4:86863600-86902000	Weak transcription	Pancreas	Pancrea
3	chr4:86875200-86915800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:86880600-86915800	Weak transcription	Gastric	stomach
5	chr4:86885000-86915600	Weak transcription	Fetal Lung	lung
6	chr4:86887600-86915600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:86888200-86899200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:86888800-86919200	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:86889400-86915800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:86889400-86935000	Weak transcription	Psoas Muscle	Psoas
11	chr4:86889600-86904000	Weak transcription	Aorta	Aorta
12	chr4:86890400-86901800	Weak transcription	Liver	Liver
13	chr4:86890400-86916000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:86891400-86894800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:86891400-86915800	Weak transcription	HSMMtube	muscle
16	chr4:86891800-86905400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:86892000-86894400	Weak transcription	Stomach Mucosa	stomach
18	chr4:86892000-86896000	Weak transcription	HSMM	muscle
19	chr4:86892000-86898600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:86892000-86898800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:86892000-86901400	Weak transcription	Fetal Kidney	kidney
22	chr4:86892000-86904000	Weak transcription	Adipose Nuclei	Adipose
23	chr4:86892000-86915600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:86892000-86915600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:86892000-86915800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:86892000-86916000	Weak transcription	Spleen	Spleen
27	chr4:86893000-86894400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:86893000-86894400	Strong transcription	Fetal Muscle Trunk	muscle
29	chr4:86893000-86894400	Strong transcription	Fetal Muscle Leg	muscle
30	chr4:86893000-86906600	Strong transcription	HUVEC	blood vessel
31	chr4:86893200-86894200	Genic enhancers	NHDF-Ad	bronchial
32	chr4:86893200-86894400	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr4:86893200-86906600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:86893200-86908600	Strong transcription	Primary B cells from peripheral blood	blood
35	chr4:86893400-86894400	Strong transcription	Ovary	ovary
36	chr4:86893400-86894600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:86893400-86895000	Weak transcription	Primary B cells from cord blood	blood
38	chr4:86893600-86894400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:86893800-86895400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr4:86894000-86894600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:86894000-86907400	Weak transcription	Osteobl	bone

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