Variant report

Variant	rs571095
Chromosome Location	chr1:94570154-94570155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94570013..94571668-chr1:94572393..94574114,2	MCF-7	breast:
2	chr1:94569733..94572105-chr1:94572652..94574259,3	K562	blood:
3	chr1:94567418..94570803-chr1:94581520..94584135,4	MCF-7	breast:
4	chr1:94569570..94572395-chr1:94575385..94578285,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72960478	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871057	chr1:94513142-94577286	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871558	chr1:94544276-94576968	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv870555	chr1:94545160-94577744	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	esv1807674	chr1:94549175-94588191	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94558200-94573000	Weak transcription	Spleen	Spleen
2	chr1:94560800-94570800	Weak transcription	Thymus	Thymus
3	chr1:94561200-94570400	Weak transcription	Dnd41	blood
4	chr1:94561600-94571400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:94564000-94572600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:94564200-94573000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr1:94564600-94570400	Weak transcription	Left Ventricle	heart
8	chr1:94564600-94573600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:94564600-94591800	Weak transcription	Right Atrium	heart
10	chr1:94564800-94577400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:94565000-94570600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:94565200-94570400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:94565400-94572400	Enhancers	Placenta	Placenta
14	chr1:94566200-94571800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:94566800-94570400	Weak transcription	A549	lung
16	chr1:94567200-94570200	Enhancers	NHEK	skin
17	chr1:94567200-94570400	Weak transcription	Fetal Lung	lung
18	chr1:94567200-94570800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr1:94567200-94571600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:94567400-94585400	Weak transcription	Brain Anterior Caudate	brain
21	chr1:94568600-94570400	Weak transcription	Fetal Kidney	kidney
22	chr1:94568600-94571000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:94568800-94570800	Enhancers	HMEC	breast
24	chr1:94568800-94572200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:94569200-94571800	Enhancers	Adipose Nuclei	Adipose
26	chr1:94569400-94570400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr1:94569800-94571800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:94569800-94571800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr1:94570000-94570600	Bivalent Enhancer	Fetal Thymus	thymus
30	chr1:94570000-94571000	Enhancers	Pancreas	Pancrea
31	chr1:94570000-94571800	Enhancers	Liver	Liver
32	chr1:94570000-94572000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:94570000-94572400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr1:94570000-94572600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr1:94570000-94573600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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