Variant report

Variant	rs571155586
Chromosome Location	chr11:34941679-34941680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:34941575-34942131	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:34941386..34944859-chr11:34946221..34949330,3	K562	blood:
2	chr11:34940522..34942447-chr11:34942724..34944906,2	K562	blood:
3	chr11:34932295..34934736-chr11:34941620..34944045,2	MCF-7	breast:

Variant related genes	Relation type
APIP	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv2757436	chr11:34913315-34963728	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759817	chr11:34913315-34963728	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
5	esv34511	chr11:34914124-34942836	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
6	esv2756165	chr11:34914137-34942836	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
7	esv2754010	chr11:34940724-35001024	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1055116	chr11:34940737-34962291	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv437715	chr11:34941494-34951993	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34938800-34951400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:34938800-34957400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:34938800-34990400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:34939000-34950600	Weak transcription	Gastric	stomach
5	chr11:34939200-34948000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:34939200-34950000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:34939200-34950200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:34939200-34952200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:34939200-34952800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:34939200-34953000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr11:34939200-34953400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr11:34939200-34956000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:34939200-35000000	Weak transcription	Thymus	Thymus
14	chr11:34939400-34942000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:34939400-34942800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:34939400-34945200	Weak transcription	HSMMtube	muscle
17	chr11:34939400-34947800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr11:34939400-34952800	Weak transcription	Primary B cells from cord blood	blood
19	chr11:34939400-34953200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:34939400-34953400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:34939600-34943000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:34939600-34945600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:34939600-34946600	Weak transcription	Stomach Mucosa	stomach
24	chr11:34939600-34947600	Weak transcription	Fetal Kidney	kidney
25	chr11:34939600-34947800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr11:34939600-34949400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr11:34939600-34949800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:34939600-34950200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:34939600-34962600	Weak transcription	Right Ventricle	heart
30	chr11:34939800-34942400	Enhancers	Adipose Nuclei	Adipose
31	chr11:34939800-34942800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:34939800-34947400	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:34939800-34949600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:34939800-34950800	Weak transcription	Pancreas	Pancrea
35	chr11:34939800-34951200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:34939800-34951400	Weak transcription	Fetal Intestine Small	intestine
37	chr11:34939800-34953800	Weak transcription	Placenta	Placenta
38	chr11:34939800-34960400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:34940000-34943600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:34940000-34946200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:34940000-34946800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:34940000-34947800	Weak transcription	HSMM	muscle
43	chr11:34940000-34947800	Weak transcription	HUVEC	blood vessel
44	chr11:34940000-34950800	Weak transcription	Right Atrium	heart
45	chr11:34940000-34954000	Weak transcription	Fetal Muscle Leg	muscle
46	chr11:34940000-34959200	Weak transcription	Fetal Brain Male	brain
47	chr11:34940000-34963800	Weak transcription	Spleen	Spleen
48	chr11:34940200-34942200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:34940200-34946600	Weak transcription	Brain Hippocampus Middle	brain
50	chr11:34940200-34946800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links