Variant report

Variant	rs571165976
Chromosome Location	chr5:36740650-36740651
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36737437..36743261-chr5:36869203..36877805,11	K562	blood:
2	chr5:36738583..36742028-chr5:37005460..37008682,3	K562	blood:
3	chr5:36735951..36742213-chr5:36874615..36878501,8	K562	blood:
4	chr5:36731899..36747051-chr5:36866466..36880074,35	MCF-7	breast:
5	chr5:36737510..36747021-chr5:36869125..36879786,23	MCF-7	breast:
6	chr5:36740003..36742433-chr5:37003090..37005628,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164190	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv3516898	chr5:36740639-36744297	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36729200-36744200	Weak transcription	Spleen	Spleen
2	chr5:36738000-36743800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:36738800-36743000	Weak transcription	Fetal Brain Female	brain
4	chr5:36739200-36742200	Enhancers	Stomach Mucosa	stomach
5	chr5:36739200-36742400	Enhancers	Fetal Muscle Leg	muscle
6	chr5:36739400-36740800	Flanking Active TSS	K562	blood
7	chr5:36739400-36741800	Enhancers	Fetal Intestine Small	intestine
8	chr5:36739600-36741600	Enhancers	Duodenum Mucosa	Duodenum
9	chr5:36739800-36742200	Enhancers	Fetal Lung	lung
10	chr5:36739800-36744400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:36740000-36740800	Enhancers	NH-A	brain
12	chr5:36740000-36741800	Enhancers	Gastric	stomach
13	chr5:36740000-36741800	Enhancers	Pancreas	Pancrea
14	chr5:36740000-36742000	Enhancers	Fetal Kidney	kidney
15	chr5:36740000-36743800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:36740200-36741000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:36740200-36741000	Enhancers	HSMM	muscle
18	chr5:36740200-36741200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:36740200-36741400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:36740200-36741400	Enhancers	Fetal Muscle Trunk	muscle
21	chr5:36740200-36742400	Enhancers	Fetal Stomach	stomach
22	chr5:36740200-36743800	Weak transcription	NHEK	skin
23	chr5:36740200-36744000	Weak transcription	Brain Anterior Caudate	brain
24	chr5:36740400-36740800	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr5:36740400-36741400	Enhancers	Fetal Intestine Large	intestine
26	chr5:36740400-36741400	Enhancers	HSMMtube	muscle
27	chr5:36740400-36743800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr5:36740600-36740800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr5:36740600-36740800	Enhancers	Right Atrium	heart
30	chr5:36740600-36741000	Enhancers	Small Intestine	intestine
31	chr5:36740600-36744000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr5:36740600-36744000	Weak transcription	Osteobl	bone

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