Variant report

Variant	rs571171479
Chromosome Location	chr11:76161578-76161579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76159669..76162369-chr11:76163476..76167380,4	K562	blood:
2	chr11:76159376..76162280-chr11:76162803..76165998,5	K562	blood:
3	chr11:76152961..76155876-chr11:76158205..76163681,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255135	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv528623	chr11:76161389-76168219	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76157000-76166400	Weak transcription	Small Intestine	intestine
2	chr11:76157200-76161600	Weak transcription	Lung	lung
3	chr11:76157200-76166400	Weak transcription	Ovary	ovary
4	chr11:76157200-76168400	Weak transcription	Psoas Muscle	Psoas
5	chr11:76157200-76183400	Weak transcription	Gastric	stomach
6	chr11:76157200-76183600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:76157200-76183600	Weak transcription	Spleen	Spleen
8	chr11:76157200-76183800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:76157200-76190200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:76157200-76191200	Weak transcription	Stomach Mucosa	stomach
11	chr11:76157400-76161600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:76157400-76164000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:76157400-76164000	Weak transcription	NHDF-Ad	bronchial
14	chr11:76157400-76164200	Weak transcription	Fetal Kidney	kidney
15	chr11:76157400-76165800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:76157400-76169800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:76157400-76171000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:76157400-76174800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:76157400-76179800	Weak transcription	HSMMtube	muscle
20	chr11:76157400-76183400	Weak transcription	Right Ventricle	heart
21	chr11:76157400-76183600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:76157400-76183600	Weak transcription	Esophagus	oesophagus
23	chr11:76157400-76190200	Weak transcription	Colonic Mucosa	Colon
24	chr11:76157600-76173600	Weak transcription	Brain Substantia Nigra	brain
25	chr11:76157800-76161600	Weak transcription	Fetal Intestine Small	intestine
26	chr11:76157800-76161600	Weak transcription	Fetal Stomach	stomach
27	chr11:76157800-76163000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:76157800-76166200	Weak transcription	NHLF	lung
29	chr11:76157800-76166400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:76157800-76169200	Weak transcription	Brain Anterior Caudate	brain
31	chr11:76157800-76174800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:76158000-76161600	Strong transcription	Duodenum Mucosa	Duodenum
33	chr11:76158000-76162800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr11:76158000-76163000	Weak transcription	Primary T cells from cord blood	blood
35	chr11:76158000-76163000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:76158000-76163000	Weak transcription	A549	lung
37	chr11:76158000-76163200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:76158000-76163400	Strong transcription	Fetal Intestine Large	intestine
39	chr11:76158000-76163400	Strong transcription	Fetal Muscle Leg	muscle
40	chr11:76158000-76164000	Weak transcription	HUVEC	blood vessel
41	chr11:76158000-76165400	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr11:76158000-76167200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:76158000-76168200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:76158000-76170000	Weak transcription	Fetal Heart	heart
45	chr11:76158000-76171400	Strong transcription	Liver	Liver
46	chr11:76158000-76171400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr11:76158000-76171800	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr11:76158000-76171800	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr11:76158000-76172000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:76158000-76172000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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