Variant report

Variant	rs571181092
Chromosome Location	chr11:102102457-102102458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:102102419-102102461	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000254422	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv975221	chr11:102101576-102102673	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102064000-102105400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:102074000-102104200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:102075400-102105600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:102078800-102105600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:102079000-102107200	Weak transcription	Fetal Brain Male	brain
6	chr11:102081200-102118600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:102086800-102111600	Weak transcription	Lung	lung
8	chr11:102088600-102105200	Weak transcription	Brain Substantia Nigra	brain
9	chr11:102091800-102102800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:102093000-102113000	Weak transcription	Ovary	ovary
11	chr11:102095200-102105400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:102095200-102118600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:102096800-102114600	Weak transcription	Small Intestine	intestine
14	chr11:102097000-102105800	Weak transcription	Right Ventricle	heart
15	chr11:102097200-102105800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:102097400-102105400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:102097600-102105200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:102097800-102102600	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:102097800-102119600	Weak transcription	Right Atrium	heart
20	chr11:102098000-102111600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:102098400-102105000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:102098400-102105800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:102098400-102106600	Strong transcription	HSMM	muscle
24	chr11:102098400-102118600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:102098600-102105400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:102098600-102105800	Weak transcription	Psoas Muscle	Psoas
27	chr11:102098800-102104400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:102098800-102104400	Weak transcription	Left Ventricle	heart
29	chr11:102099000-102112800	Weak transcription	Hela-S3	cervix
30	chr11:102100800-102104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:102100800-102105200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:102100800-102105400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr11:102100800-102105600	Weak transcription	Aorta	Aorta
34	chr11:102100800-102105600	Weak transcription	Colon Smooth Muscle	Colon
35	chr11:102100800-102109000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:102100800-102111400	Weak transcription	A549	lung
37	chr11:102100800-102112800	Weak transcription	Fetal Heart	heart
38	chr11:102100800-102113000	Weak transcription	Esophagus	oesophagus
39	chr11:102101000-102104200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr11:102101000-102104400	Weak transcription	Fetal Intestine Small	intestine
41	chr11:102101000-102104400	Weak transcription	Fetal Muscle Leg	muscle
42	chr11:102101000-102104400	Weak transcription	Fetal Stomach	stomach
43	chr11:102101000-102104800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:102101000-102104800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:102101000-102107800	Weak transcription	Fetal Kidney	kidney
46	chr11:102101000-102111200	Weak transcription	NHLF	lung
47	chr11:102101200-102104000	Weak transcription	NHDF-Ad	bronchial
48	chr11:102101200-102104200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:102101200-102104800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr11:102101200-102105400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links