Variant report

Variant	rs571185982
Chromosome Location	chr5:107338719-107338720
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107332693..107334247-chr5:107337068..107339147,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv327830	chr5:107337906-107340794	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107321200-107338800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
4	chr5:107333800-107338800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:107333800-107338800	Weak transcription	Fetal Brain Male	brain
6	chr5:107338400-107338800	Enhancers	GM12878-XiMat	blood
7	chr5:107338400-107338800	Enhancers	NHDF-Ad	bronchial
8	chr5:107338400-107339000	Active TSS	Osteobl	bone
9	chr5:107338400-107339400	Flanking Active TSS	Dnd41	blood
10	chr5:107338400-107339600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:107338600-107338800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:107338600-107338800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:107338600-107338800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:107338600-107338800	Enhancers	Liver	Liver
15	chr5:107338600-107338800	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr5:107338600-107338800	Active TSS	Hela-S3	cervix
17	chr5:107338600-107338800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr5:107338600-107339200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:107338600-107339200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:107338600-107339200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr5:107338600-107339200	Flanking Active TSS	HUVEC	blood vessel
22	chr5:107338600-107339400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:107338600-107339800	Enhancers	Primary T helper cells PMA-I stimulated	--

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