Variant report

Variant	rs571194361
Chromosome Location	chr15:56529027-56529028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56523183..56527072-chr15:56528127..56530635,4	K562	blood:
2	chr15:56521792..56524721-chr15:56527729..56529667,2	MCF-7	breast:
3	chr15:56516120..56519450-chr15:56528763..56530830,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2760380	chr15:56510123-56529955	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3311802	chr15:56529020-56532537	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3311803	chr15:56529020-56532537	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56508000-56534400	Weak transcription	Fetal Heart	heart
2	chr15:56509000-56533600	Weak transcription	Osteobl	bone
3	chr15:56513800-56530200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr15:56514000-56535000	Weak transcription	Pancreas	Pancrea
5	chr15:56514600-56532400	Weak transcription	HSMMtube	muscle
6	chr15:56514800-56534800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:56515800-56529200	Weak transcription	Colon Smooth Muscle	Colon
8	chr15:56520200-56530200	ZNF genes & repeats	Dnd41	blood
9	chr15:56521400-56532000	ZNF genes & repeats	GM12878-XiMat	blood
10	chr15:56522800-56533600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:56524600-56532000	Weak transcription	NHEK	skin
12	chr15:56524600-56532400	Weak transcription	HSMM	muscle
13	chr15:56524600-56533800	Weak transcription	Aorta	Aorta
14	chr15:56524600-56534800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:56524800-56531800	Weak transcription	NH-A	brain
16	chr15:56524800-56532000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:56524800-56533600	Weak transcription	Brain Hippocampus Middle	brain
18	chr15:56524800-56533600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:56524800-56533800	Weak transcription	Ovary	ovary
20	chr15:56524800-56534800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:56524800-56534800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:56524800-56534800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:56524800-56534800	Weak transcription	Small Intestine	intestine
24	chr15:56524800-56535000	Weak transcription	Esophagus	oesophagus
25	chr15:56525000-56529600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:56525000-56529800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr15:56525000-56533400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:56525000-56533600	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr15:56525200-56529800	Weak transcription	Brain Anterior Caudate	brain
30	chr15:56525200-56531000	Weak transcription	Left Ventricle	heart
31	chr15:56525200-56531200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:56525400-56533600	Weak transcription	Brain Substantia Nigra	brain
33	chr15:56525400-56534800	Weak transcription	Placenta	Placenta
34	chr15:56525400-56535000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:56525600-56530000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr15:56525600-56532400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:56525600-56533600	Weak transcription	Fetal Stomach	stomach
38	chr15:56525600-56535000	Weak transcription	Lung	lung
39	chr15:56525800-56532000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr15:56525800-56533200	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr15:56525800-56533400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:56525800-56533800	Weak transcription	Fetal Muscle Leg	muscle
43	chr15:56526000-56532400	Weak transcription	Brain Germinal Matrix	brain
44	chr15:56526000-56532400	Weak transcription	NHDF-Ad	bronchial
45	chr15:56526000-56533400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:56526000-56533400	Weak transcription	Fetal Intestine Small	intestine
47	chr15:56526000-56533400	Weak transcription	Thymus	Thymus
48	chr15:56526000-56533600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:56526000-56533600	Weak transcription	Brain Angular Gyrus	brain
50	chr15:56526000-56533600	Weak transcription	Rectal Mucosa Donor 31	rectum

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