Variant report

Variant	rs571196789
Chromosome Location	chr5:108162828-108162829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv471039	chr5:108133967-108245089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3430293	chr5:108162485-108162952	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108146800-108183600	Weak transcription	Ovary	ovary
2	chr5:108147000-108165800	Weak transcription	Left Ventricle	heart
3	chr5:108147000-108198800	Weak transcription	Aorta	Aorta
4	chr5:108147000-108208800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:108150400-108171400	Weak transcription	NHDF-Ad	bronchial
6	chr5:108153400-108176400	Weak transcription	NHLF	lung
7	chr5:108154800-108165600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:108154800-108176400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:108156000-108174400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:108156400-108178200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:108156600-108166400	Weak transcription	Colon Smooth Muscle	Colon
12	chr5:108160200-108172400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr5:108162800-108163000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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