Variant report

Variant	rs571202766
Chromosome Location	chr22:29280715-29280716
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:29280249..29282213-chr22:29433685..29436671,2	MCF-7	breast:
2	chr22:29280662..29283145-chr22:29436035..29437760,2	K562	blood:
3	chr22:29279568..29281765-chr22:29467462..29470387,2	K562	blood:
4	chr22:29275977..29281461-chr22:29425203..29430435,9	MCF-7	breast:
5	chr22:29137399..29139735-chr22:29278518..29281229,2	MCF-7	breast:
6	chr22:29280624..29284164-chr22:29307760..29311501,3	MCF-7	breast:
7	chr22:29277854..29280834-chr3:15899899..15902425,2	MCF-7	breast:
8	chr22:29194507..29196726-chr22:29278986..29282462,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000183765	Chromatin interaction
ENSG00000226471	Chromatin interaction
ENSG00000100209	Chromatin interaction
ENSG00000206560	Chromatin interaction
ENSG00000100219	Chromatin interaction
ENSG00000177993	Chromatin interaction
ENSG00000183762	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv3589	chr22:29265164-29288935	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	esv3360361	chr22:29278452-29281300	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	esv3379535	chr22:29278477-29281525	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	esv3397718	chr22:29278952-29280850	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29278600-29281200	Active TSS	Aorta	Aorta
2	chr22:29278600-29281200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr22:29278600-29281600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr22:29278600-29282600	Active TSS	Brain Anterior Caudate	brain
5	chr22:29278800-29280800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr22:29278800-29280800	Active TSS	H9 Cell Line	embryonic stem cell
7	chr22:29278800-29280800	Active TSS	A549	lung
8	chr22:29278800-29281000	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr22:29278800-29281200	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr22:29278800-29281200	Active TSS	HSMM	muscle
11	chr22:29278800-29281600	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr22:29278800-29281800	Active TSS	Fetal Kidney	kidney
13	chr22:29279000-29280800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr22:29279000-29280800	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr22:29279000-29280800	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr22:29279000-29280800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr22:29279000-29280800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr22:29279000-29280800	Active TSS	Fetal Intestine Large	intestine
19	chr22:29279000-29281000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr22:29279000-29281000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr22:29279000-29281000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr22:29279000-29281200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr22:29279000-29281400	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr22:29279000-29281600	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr22:29279000-29282000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr22:29280000-29281200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr22:29280000-29281400	Flanking Active TSS	Colonic Mucosa	Colon
28	chr22:29280200-29280800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr22:29280200-29280800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
30	chr22:29280200-29280800	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr22:29280200-29280800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr22:29280200-29280800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr22:29280200-29281000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
34	chr22:29280200-29281000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr22:29280200-29281000	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
36	chr22:29280200-29281000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr22:29280200-29281200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr22:29280200-29281200	Flanking Active TSS	Brain Germinal Matrix	brain
39	chr22:29280200-29281200	Flanking Active TSS	Right Ventricle	heart
40	chr22:29280200-29281200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr22:29280200-29281400	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr22:29280200-29281400	Flanking Active TSS	Placenta	Placenta
43	chr22:29280200-29281400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr22:29280200-29282200	Bivalent/Poised TSS	HepG2	liver
45	chr22:29280400-29280800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr22:29280400-29280800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
47	chr22:29280400-29280800	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
48	chr22:29280400-29280800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr22:29280400-29280800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr22:29280400-29280800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links