Variant report

Variant	rs571216421
Chromosome Location	chr17:66907469-66907470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1061151	chr17:66881617-66973917	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv908697	chr17:66885526-66913936	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv908698	chr17:66885526-66915598	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv908699	chr17:66885526-66933003	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv908700	chr17:66885526-66985992	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv908701	chr17:66888346-66978319	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv575928	chr17:66894861-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	nsv1066412	chr17:66897540-66954067	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv1846502	chr17:66899261-66966274	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv1849165	chr17:66899261-66978319	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv908702	chr17:66899290-66933003	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv908703	chr17:66904001-66978319	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv575929	chr17:66906217-66923711	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66877800-66918200	Weak transcription	Fetal Brain Male	brain
2	chr17:66902200-66907800	Enhancers	Brain Substantia Nigra	brain
3	chr17:66902400-66907800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr17:66902800-66908000	Enhancers	HepG2	liver
5	chr17:66903000-66907800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr17:66903200-66908200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr17:66903800-66907600	Enhancers	Colon Smooth Muscle	Colon
8	chr17:66904600-66911600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr17:66905200-66907600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr17:66905200-66907800	Enhancers	Brain Cingulate Gyrus	brain
11	chr17:66905600-66908200	Enhancers	Brain Angular Gyrus	brain
12	chr17:66905800-66907800	Enhancers	NHDF-Ad	bronchial
13	chr17:66905800-66922200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr17:66906200-66907600	Enhancers	Placenta	Placenta
15	chr17:66906200-66907600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr17:66906400-66907600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr17:66906400-66907600	Enhancers	Esophagus	oesophagus
18	chr17:66906400-66907800	Genic enhancers	Fetal Muscle Trunk	muscle
19	chr17:66906400-66907800	Enhancers	Lung	lung
20	chr17:66906400-66907800	Enhancers	Psoas Muscle	Psoas
21	chr17:66906400-66908000	Enhancers	Right Atrium	heart
22	chr17:66906400-66908000	Genic enhancers	Right Ventricle	heart
23	chr17:66906400-66908200	Genic enhancers	Left Ventricle	heart
24	chr17:66906600-66907600	Weak transcription	HSMMtube	muscle
25	chr17:66906600-66907800	Genic enhancers	Fetal Muscle Leg	muscle
26	chr17:66906600-66927400	Weak transcription	Aorta	Aorta
27	chr17:66906800-66907800	Enhancers	Adipose Nuclei	Adipose
28	chr17:66906800-66908000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr17:66906800-66908000	Enhancers	Rectal Smooth Muscle	rectum
30	chr17:66906800-66928200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr17:66907000-66908200	Enhancers	Brain Anterior Caudate	brain
32	chr17:66907000-66920600	Weak transcription	Fetal Heart	heart
33	chr17:66907000-66940800	Weak transcription	Spleen	Spleen
34	chr17:66907200-66907600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr17:66907200-66907800	ZNF genes & repeats	Fetal Stomach	stomach
36	chr17:66907200-66909600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr17:66907200-66910000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr17:66907200-66910000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr17:66907200-66910000	Strong transcription	Fetal Lung	lung
40	chr17:66907200-66913200	Weak transcription	Osteobl	bone
41	chr17:66907200-66923800	Strong transcription	Liver	Liver
42	chr17:66907400-66907600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr17:66907400-66908000	Enhancers	Brain Hippocampus Middle	brain
44	chr17:66907400-66908800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr17:66907400-66910000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr17:66907400-66910000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr17:66907400-66910200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr17:66907400-66916200	Strong transcription	Ovary	ovary

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