Variant report

Variant	rs571225006
Chromosome Location	chr17:38376162-38376163
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38374160..38377020-chr17:38442777..38445786,6	K562	blood:
2	chr17:38346506..38348012-chr17:38375510..38377087,2	MCF-7	breast:
3	chr17:38335879..38338134-chr17:38374200..38376894,2	MCF-7	breast:
4	chr17:38375087..38377704-chr17:38472815..38475239,3	MCF-7	breast:
5	chr17:38374332..38376938-chr17:38443051..38445440,2	MCF-7	breast:
6	chr17:38374207..38376996-chr17:38442281..38444578,5	K562	blood:
7	chr17:38374494..38377034-chr17:38473243..38475629,2	K562	blood:

Variant related genes	Relation type
ENSG00000108352	Chromatin interaction
ENSG00000094804	Chromatin interaction
ENSG00000131759	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv525796	chr17:38306365-38405037	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3325187	chr17:38374651-38377199	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38374600-38376200	Active TSS	Primary B cells from cord blood	blood
2	chr17:38374600-38376200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr17:38374600-38376800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr17:38374600-38376800	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr17:38374600-38376800	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr17:38374600-38376800	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr17:38374600-38376800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr17:38374600-38376800	Active TSS	Brain Cingulate Gyrus	brain
9	chr17:38374600-38376800	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr17:38374600-38377800	Active TSS	Brain Angular Gyrus	brain
11	chr17:38374800-38376400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr17:38374800-38376400	Active TSS	Brain Substantia Nigra	brain
13	chr17:38374800-38376400	Active TSS	Duodenum Mucosa	Duodenum
14	chr17:38374800-38376400	Active TSS	Fetal Brain Female	brain
15	chr17:38374800-38376400	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr17:38374800-38376600	Active TSS	H1 Cell Line	embryonic stem cell
17	chr17:38374800-38376600	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr17:38374800-38376600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr17:38374800-38376600	Active TSS	Colonic Mucosa	Colon
20	chr17:38374800-38376800	Active TSS	H9 Cell Line	embryonic stem cell
21	chr17:38374800-38376800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr17:38374800-38376800	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr17:38374800-38376800	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr17:38374800-38376800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr17:38374800-38376800	Active TSS	Fetal Kidney	kidney
26	chr17:38374800-38376800	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr17:38374800-38376800	Active TSS	Rectal Smooth Muscle	rectum
28	chr17:38375000-38376200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr17:38375000-38376200	Active TSS	Hela-S3	cervix
30	chr17:38375000-38376400	Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr17:38375000-38376400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr17:38375000-38376400	Active TSS	Brain Anterior Caudate	brain
33	chr17:38375000-38376400	Active TSS	Brain Hippocampus Middle	brain
34	chr17:38375000-38376400	Active TSS	Fetal Brain Male	brain
35	chr17:38375000-38376400	Active TSS	Fetal Stomach	stomach
36	chr17:38375000-38376400	Active TSS	Pancreas	Pancrea
37	chr17:38375000-38376400	Active TSS	Sigmoid Colon	Sigmoid Colon
38	chr17:38375000-38376600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr17:38375000-38376600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr17:38375000-38376600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:38375000-38376600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chr17:38375000-38376600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr17:38375000-38376600	Active TSS	Primary T killer memory cells from peripheral blood	blood
44	chr17:38375000-38376600	Active TSS	Aorta	Aorta
45	chr17:38375000-38376600	Active TSS	Esophagus	oesophagus
46	chr17:38375000-38376600	Active TSS	Gastric	stomach
47	chr17:38375000-38376600	Active TSS	Ovary	ovary
48	chr17:38375000-38376600	Active TSS	Placenta Amnion	Placenta Amnion
49	chr17:38375000-38376600	Active TSS	Psoas Muscle	Psoas
50	chr17:38375000-38376600	Active TSS	Stomach Smooth Muscle	stomach

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