Variant report

Variant	rs571233877
Chromosome Location	chr17:15182667-15182668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PMP22-2	chr17:15182656-15182794	XLOC_012397
2	lnc-PMP22-2	chr17:15182656-15182832	XLOC_012397

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3315142	chr17:15182127-15186725	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15173200-15192600	Weak transcription	Left Ventricle	heart
2	chr17:15180800-15183600	Enhancers	Hela-S3	cervix
3	chr17:15181600-15183400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr17:15181600-15183400	Flanking Active TSS	A549	lung
5	chr17:15181800-15183000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr17:15181800-15183200	Enhancers	HSMMtube	muscle
7	chr17:15182000-15183000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr17:15182000-15183000	Weak transcription	Right Atrium	heart
9	chr17:15182200-15183200	Enhancers	HMEC	breast
10	chr17:15182200-15183200	Enhancers	NH-A	brain
11	chr17:15182200-15183200	Enhancers	NHLF	lung
12	chr17:15182200-15183600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr17:15182200-15187600	Weak transcription	Fetal Heart	heart
14	chr17:15182400-15183000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr17:15182400-15183200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr17:15182400-15183400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr17:15182400-15183400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr17:15182400-15183600	Enhancers	NHDF-Ad	bronchial
19	chr17:15182400-15184800	Weak transcription	HSMM	muscle
20	chr17:15182600-15182800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr17:15182600-15182800	Flanking Active TSS	Osteobl	bone

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