Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137912559..137915122-chr7:138143152..138145468,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11764095	0.84[EUR][1000 genomes]
rs11771184	0.80[EUR][1000 genomes]
rs13221468	0.85[EUR][1000 genomes]
rs13221578	0.85[EUR][1000 genomes]
rs13221616	0.85[EUR][1000 genomes]
rs13228035	0.82[EUR][1000 genomes]
rs13228776	0.85[EUR][1000 genomes]
rs13230213	0.87[EUR][1000 genomes]
rs13234539	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13234577	0.84[EUR][1000 genomes]
rs13235037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1387585	0.82[EUR][1000 genomes]
rs2352477	0.83[ASN][1000 genomes]
rs2352478	0.90[ASN][1000 genomes]
rs34230550	0.85[EUR][1000 genomes]
rs34446043	0.84[EUR][1000 genomes]
rs34458644	0.85[EUR][1000 genomes]
rs4142644	0.85[EUR][1000 genomes]
rs4142645	0.85[EUR][1000 genomes]
rs57177181	0.84[EUR][1000 genomes]
rs57628314	0.85[EUR][1000 genomes]
rs59635163	0.85[EUR][1000 genomes]
rs6944836	0.87[EUR][1000 genomes]
rs6955437	0.85[EUR][1000 genomes]
rs71309397	0.85[EUR][1000 genomes]
rs73731511	0.85[EUR][1000 genomes]
rs7780731	0.85[EUR][1000 genomes]
rs7792003	0.87[EUR][1000 genomes]
rs7794151	0.85[EUR][1000 genomes]
rs7797681	0.85[EUR][1000 genomes]
rs7797842	0.85[EUR][1000 genomes]
rs7806666	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137905800-137914800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:137905800-137928600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:137908600-137913600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:137910600-137913000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:137911000-137914400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:137911000-137916200	Weak transcription	Liver	Liver
7	chr7:137911000-137916400	Weak transcription	HepG2	liver
8	chr7:137912800-137917600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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