Variant report

Variant	rs57127141
Chromosome Location	chr3:98970179-98970180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs59761600	0.85[AFR][1000 genomes]
rs60272263	0.85[AFR][1000 genomes]
rs73858006	0.90[AFR][1000 genomes]
rs73858013	0.90[AFR][1000 genomes]
rs73858023	0.96[AFR][1000 genomes]
rs73858024	0.90[AFR][1000 genomes]
rs73858025	0.96[AFR][1000 genomes]
rs73859871	0.85[AFR][1000 genomes]
rs73859872	0.85[AFR][1000 genomes]
rs73859882	0.85[AFR][1000 genomes]
rs73859883	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1798220	chr3:98894142-99020463	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1013972	chr3:98944446-98998206	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv999173	chr3:98944446-99007686	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002786	chr3:98944446-99013936	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98964800-98971400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:98965000-98970200	Enhancers	NHDF-Ad	bronchial
3	chr3:98966600-98970200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:98966800-98970200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:98968600-98970200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr3:98968600-98970200	Enhancers	HMEC	breast
7	chr3:98969000-98970600	Enhancers	Osteobl	bone
8	chr3:98969400-98970200	Enhancers	Aorta	Aorta
9	chr3:98969400-98970200	Enhancers	HSMM	muscle
10	chr3:98969400-98970600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:98969400-98977200	Weak transcription	HSMMtube	muscle
12	chr3:98969600-98970200	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr3:98969600-98970400	Enhancers	Liver	Liver
14	chr3:98969800-98970200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:98969800-98970400	Enhancers	Adipose Nuclei	Adipose
16	chr3:98970000-98970200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:98970000-98970200	Enhancers	Fetal Lung	lung
18	chr3:98970000-98970200	Enhancers	Right Atrium	heart
19	chr3:98970000-98970400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:98970000-98971200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links