Variant report

Variant	rs571332559
Chromosome Location	chr15:74045308-74045309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr15:74044521-74045350	ECC-1	luminal epithelium:	n/a	n/a
2	POLR2A	chr15:74045046-74045549	H1-neurons	neurons:	n/a	n/a
3	MAZ	chr15:74044597-74046256	IMR90	lung:	n/a	chr15:74044619-74044629 chr15:74044615-74044625
4	ZBTB7A	chr15:74044592-74045458	ECC-1	luminal epithelium:	n/a	n/a
5	UBTF	chr15:74045215-74045380	K562	blood:	n/a	n/a
6	POLR2A	chr15:74045033-74045901	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
C15orf59	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3421437	chr15:74043924-74046872	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv9813	chr15:74044169-74048692	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv13877	chr15:74044459-74046147	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3418540	chr15:74044749-74046697	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74043200-74046000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:74043400-74045400	Active TSS	Brain Substantia Nigra	brain
3	chr15:74043600-74045400	Active TSS	Brain Cingulate Gyrus	brain
4	chr15:74043600-74045800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr15:74043600-74046000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr15:74043800-74045400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr15:74043800-74045800	Active TSS	Right Atrium	heart
8	chr15:74043800-74046000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:74044000-74045400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:74044000-74045400	Active TSS	Brain Angular Gyrus	brain
11	chr15:74044000-74045400	Active TSS	Brain Anterior Caudate	brain
12	chr15:74044000-74045800	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr15:74044000-74045800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:74044000-74045800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:74044000-74045800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
16	chr15:74044000-74046000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
17	chr15:74044000-74046000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr15:74044000-74046000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:74044000-74046000	Active TSS	Brain Germinal Matrix	brain
20	chr15:74044000-74046000	Active TSS	Fetal Brain Female	brain
21	chr15:74044200-74045800	Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr15:74044200-74045800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:74044200-74045800	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr15:74044200-74045800	Weak transcription	Fetal Brain Male	brain
25	chr15:74044200-74045800	Bivalent/Poised TSS	Fetal Stomach	stomach
26	chr15:74044200-74045800	Active TSS	Left Ventricle	heart
27	chr15:74044200-74045800	Active TSS	Rectal Smooth Muscle	rectum
28	chr15:74044200-74046000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
29	chr15:74044200-74046000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:74044200-74046000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:74044200-74046000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
32	chr15:74044200-74046000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:74044400-74045400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:74044400-74045400	Active TSS	A549	lung
35	chr15:74044400-74045600	Bivalent/Poised TSS	Thymus	Thymus
36	chr15:74044400-74045600	Bivalent/Poised TSS	NHEK	skin
37	chr15:74044400-74045800	Active TSS	Aorta	Aorta
38	chr15:74044400-74046000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:74044400-74046000	Active TSS	Ovary	ovary
40	chr15:74044400-74046000	Active TSS	Psoas Muscle	Psoas
41	chr15:74044600-74045400	Active TSS	Gastric	stomach
42	chr15:74044600-74045600	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
43	chr15:74044600-74045600	Bivalent/Poised TSS	HepG2	liver
44	chr15:74044600-74045800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:74044600-74045800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:74044600-74045800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr15:74044600-74045800	Bivalent/Poised TSS	Osteobl	bone
48	chr15:74044600-74046000	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
49	chr15:74044800-74045400	Active TSS	NH-A	brain
50	chr15:74044800-74045600	Weak transcription	Fetal Heart	heart

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