Variant report

Variant	rs57133419
Chromosome Location	chr10:28284374-28284375
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs41306318	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58684128	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73606027	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606028	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606029	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893558	0.87[ASN][1000 genomes]
rs7903751	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923373	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1052182	chr10:28259142-28361830	Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28239800-28287200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28281000-28284400	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr10:28283800-28284400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:28283800-28285000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:28283800-28286000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:28283800-28286600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:28283800-28286600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:28284000-28284600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:28284000-28285000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:28284000-28285400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:28284200-28284400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr10:28284200-28285400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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