Variant report

Variant	rs571336954
Chromosome Location	chr3:135222571-135222572
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134319632..134320209-chr3:135222435..135223348,2	K562	blood:
2	chr3:135130991..135131960-chr3:135222470..135223123,2	MCF-7	breast:
3	chr3:134880013..134880813-chr3:135222472..135223108,2	MCF-7	breast:
4	chr3:135217363..135219573-chr3:135220450..135222728,2	MCF-7	breast:
5	chr3:134319400..134320351-chr3:135222419..135223319,2	MCF-7	breast:
6	chr3:134513381..134514586-chr3:135222393..135223990,13	MCF-7	breast:
7	chr3:134513166..134514322-chr3:135222261..135223395,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154928	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv527433	chr3:135221504-135225249	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518089	chr3:135221504-135232994	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135210600-135222600	Weak transcription	Psoas Muscle	Psoas
2	chr3:135221400-135223400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:135221800-135223000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:135222000-135222600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
5	chr3:135222000-135222800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr3:135222000-135222800	Flanking Active TSS	Fetal Brain Male	brain
7	chr3:135222000-135222800	Flanking Active TSS	Fetal Brain Female	brain
8	chr3:135222000-135223000	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr3:135222200-135222800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:135222200-135222800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr3:135222200-135222800	Enhancers	Primary B cells from peripheral blood	blood
12	chr3:135222200-135222800	Enhancers	GM12878-XiMat	blood
13	chr3:135222200-135223200	Active TSS	Brain Cingulate Gyrus	brain
14	chr3:135222400-135222600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr3:135222400-135222600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:135222400-135222600	Active TSS	Brain Anterior Caudate	brain
17	chr3:135222400-135222600	Active TSS	Brain Substantia Nigra	brain
18	chr3:135222400-135222600	Bivalent Enhancer	Hela-S3	cervix
19	chr3:135222400-135222800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr3:135222400-135222800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
21	chr3:135222400-135222800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr3:135222400-135222800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr3:135222400-135222800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr3:135222400-135222800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:135222400-135222800	Active TSS	Brain Angular Gyrus	brain
26	chr3:135222400-135222800	Flanking Active TSS	Brain Hippocampus Middle	brain
27	chr3:135222400-135222800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
28	chr3:135222400-135223000	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr3:135222400-135223000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:135222400-135223400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links