Variant report

Variant	rs57136861
Chromosome Location	chr4:48741212-48741213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73817715	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002674	chr4:48507608-49032909	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv537087	chr4:48507608-49032909	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1010923	chr4:48575156-49083089	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv537088	chr4:48575156-49083089	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1013762	chr4:48580484-49032909	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv537089	chr4:48580484-49032909	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv1792683	chr4:48686817-48764009	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1795181	chr4:48686817-48764009	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1793455	chr4:48686817-48859142	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv1010381	chr4:48701525-49309842	Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	esv1792281	chr4:48719424-48764009	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv1794245	chr4:48719424-48764009	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv1794757	chr4:48719424-48764009	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48730200-48744400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:48731600-48744000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:48731600-48751000	Weak transcription	Lung	lung
4	chr4:48731600-48779800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:48736800-48741400	Weak transcription	Primary T cells from cord blood	blood
6	chr4:48738000-48746800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr4:48738200-48745400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:48738200-48746600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr4:48738200-48747000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:48738400-48742600	Weak transcription	HUVEC	blood vessel
11	chr4:48739000-48741800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr4:48739400-48745600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr4:48739400-48747200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr4:48739600-48741400	Enhancers	K562	blood
15	chr4:48739800-48744000	Weak transcription	Brain Substantia Nigra	brain
16	chr4:48740000-48745200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr4:48740200-48741400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:48740200-48741800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr4:48740400-48741600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:48740400-48746400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:48740600-48743800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr4:48740600-48745200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr4:48740800-48743000	Enhancers	Liver	Liver
24	chr4:48740800-48746000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr4:48741000-48742000	Enhancers	Left Ventricle	heart
26	chr4:48741000-48742200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr4:48741000-48742600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:48741000-48751200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:48741200-48741600	Enhancers	Thymus	Thymus
30	chr4:48741200-48741800	Weak transcription	Pancreas	Pancrea
31	chr4:48741200-48742000	Enhancers	Psoas Muscle	Psoas
32	chr4:48741200-48744800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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