Variant report

Variant	rs57137875
Chromosome Location	chr6:57006332-57006333
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:57005871..57008219-chr6:57037080..57038650,2	K562	blood:
2	chr6:57002952..57005589-chr6:57005953..57008891,3	MCF-7	breast:
3	chr6:56994297..56995977-chr6:57004990..57006516,2	K562	blood:
4	chr6:57004320..57006746-chr6:57012025..57013784,2	MCF-7	breast:
5	chr6:57005006..57007757-chr6:57049256..57051462,2	K562	blood:
6	chr6:57005624..57007757-chr6:57049962..57051684,2	K562	blood:

Variant related genes	Relation type
ENSG00000226803	Chromatin interaction
ENSG00000112208	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs60975519	1.00[AMR][1000 genomes]
rs61027677	1.00[AMR][1000 genomes]
rs7747209	1.00[AMR][1000 genomes]
rs7765006	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3430228	chr6:56830972-57079281	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv462949	chr6:56973902-57098973	ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv603190	chr6:56973902-57098973	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56966600-57012400	Weak transcription	Spleen	Spleen
2	chr6:56966800-57018000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:56968200-57036400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:56968600-57006600	Weak transcription	Brain Angular Gyrus	brain
5	chr6:56968600-57018400	Weak transcription	Psoas Muscle	Psoas
6	chr6:56970200-57007600	Weak transcription	Fetal Kidney	kidney
7	chr6:56974000-57012400	Weak transcription	HUVEC	blood vessel
8	chr6:56974200-57012000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:56975000-57006400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:56975400-57006800	Weak transcription	NHLF	lung
11	chr6:56985600-57036800	Weak transcription	Pancreas	Pancrea
12	chr6:56986400-57012000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:56988000-57009000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:56988200-57009400	Weak transcription	Fetal Intestine Small	intestine
15	chr6:56991600-57036600	Weak transcription	Small Intestine	intestine
16	chr6:56992200-57006600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:56993000-57017000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:56994400-57012000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:56995600-57012000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:56995800-57006800	Weak transcription	Brain Anterior Caudate	brain
21	chr6:56995800-57006800	Weak transcription	Colon Smooth Muscle	Colon
22	chr6:56995800-57008800	Weak transcription	Fetal Stomach	stomach
23	chr6:56995800-57012600	Weak transcription	Right Ventricle	heart
24	chr6:56995800-57036600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:56996000-57036800	Weak transcription	Gastric	stomach
26	chr6:56996200-57012200	Weak transcription	Lung	lung
27	chr6:56996200-57036600	Weak transcription	Fetal Brain Male	brain
28	chr6:56996400-57012200	Weak transcription	Fetal Heart	heart
29	chr6:56996400-57036600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:56997000-57006800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr6:56997000-57011800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:56997200-57012400	Weak transcription	Esophagus	oesophagus
33	chr6:56997400-57012000	Weak transcription	Colonic Mucosa	Colon
34	chr6:56998000-57006800	Weak transcription	NHEK	skin
35	chr6:56998800-57006800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:56998800-57027400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:56999000-57006600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr6:56999000-57006800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr6:56999000-57011800	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:56999000-57012000	Weak transcription	Aorta	Aorta
41	chr6:56999000-57012000	Weak transcription	Ovary	ovary
42	chr6:56999400-57006600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr6:56999600-57008400	Weak transcription	Fetal Brain Female	brain
44	chr6:56999600-57012000	Weak transcription	Left Ventricle	heart
45	chr6:56999800-57006800	Weak transcription	Fetal Lung	lung
46	chr6:56999800-57012000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:56999800-57012000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:56999800-57012400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:56999800-57036600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:57000000-57006600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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