Variant report

Variant	rs57139026
Chromosome Location	chr3:115742935-115742936
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11923285	1.00[EUR][1000 genomes]
rs4557152	1.00[EUR][1000 genomes]
rs57682148	1.00[EUR][1000 genomes]
rs59681834	1.00[EUR][1000 genomes]
rs61351848	1.00[EUR][1000 genomes]
rs6438288	1.00[EUR][1000 genomes]
rs6438289	1.00[EUR][1000 genomes]
rs6776555	1.00[EUR][1000 genomes]
rs6801473	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6803831	1.00[EUR][1000 genomes]
rs72957762	1.00[EUR][1000 genomes]
rs72959722	1.00[EUR][1000 genomes]
rs73858515	1.00[EUR][1000 genomes]
rs8179922	1.00[EUR][1000 genomes]
rs9814019	1.00[EUR][1000 genomes]
rs9824257	1.00[EUR][1000 genomes]
rs9844922	1.00[EUR][1000 genomes]
rs9855990	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931948	chr3:114884574-115802562	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2760762	chr3:115476222-115807650	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv829685	chr3:115643521-115812913	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115734800-115746200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:115742600-115743000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:115742600-115743200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:115742600-115743200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:115742600-115743200	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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