Variant report

Variant	rs571390864
Chromosome Location	chr7:116663045-116663046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:116503087..116504687-chr7:116661264..116663427,2	K562	blood:
2	chr7:116591200..116595164-chr7:116659811..116663168,5	K562	blood:
3	chr7:116661033..116663494-chr7:116665677..116669530,5	K562	blood:
4	chr7:116662894..116664584-chr7:116677550..116680143,2	K562	blood:

Variant related genes	Relation type
ENSG00000227199	Chromatin interaction
ENSG00000214188	Chromatin interaction
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3336037	chr7:116662950-116663173	Weak transcription Active TSS Flanking Active TSS Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116659600-116663400	Active TSS	Brain Cingulate Gyrus	brain
2	chr7:116660000-116663600	Active TSS	Aorta	Aorta
3	chr7:116660000-116663600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:116660000-116663800	Active TSS	Brain Hippocampus Middle	brain
5	chr7:116660000-116664400	Active TSS	Fetal Brain Female	brain
6	chr7:116660600-116663400	Active TSS	NH-A	brain
7	chr7:116660800-116666600	Weak transcription	Right Ventricle	heart
8	chr7:116661000-116663800	Enhancers	K562	blood
9	chr7:116661000-116664800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:116661000-116664800	Weak transcription	NHDF-Ad	bronchial
11	chr7:116661000-116664800	Weak transcription	Osteobl	bone
12	chr7:116661000-116665600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:116661000-116666000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:116661000-116666600	Weak transcription	Ovary	ovary
15	chr7:116661000-116666600	Weak transcription	Pancreas	Pancrea
16	chr7:116661000-116666600	Weak transcription	Right Atrium	heart
17	chr7:116661000-116669400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:116661200-116664800	Weak transcription	HUVEC	blood vessel
19	chr7:116661400-116663200	Flanking Active TSS	Fetal Lung	lung
20	chr7:116661400-116663600	Enhancers	Brain Substantia Nigra	brain
21	chr7:116661400-116666800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:116661600-116663600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:116661600-116663800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:116661600-116663800	Enhancers	Fetal Heart	heart
25	chr7:116661600-116670800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:116661800-116663800	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr7:116661800-116668600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr7:116662000-116665400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr7:116662000-116675200	Weak transcription	Fetal Stomach	stomach
30	chr7:116662200-116665400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr7:116662400-116663600	Enhancers	Colon Smooth Muscle	Colon
32	chr7:116662400-116663600	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr7:116662400-116663600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr7:116662400-116663800	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr7:116662600-116663200	Flanking Active TSS	Brain Germinal Matrix	brain
36	chr7:116662600-116663600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:116662600-116663600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr7:116662600-116664200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr7:116662800-116663200	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr7:116662800-116663600	Flanking Active TSS	Fetal Brain Male	brain
41	chr7:116662800-116663800	Enhancers	Primary T cells from cord blood	blood
42	chr7:116662800-116663800	Active TSS	Brain Angular Gyrus	brain
43	chr7:116662800-116663800	Flanking Active TSS	GM12878-XiMat	blood
44	chr7:116663000-116663200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr7:116663000-116663200	Enhancers	Stomach Smooth Muscle	stomach
46	chr7:116663000-116663200	Flanking Active TSS	HSMMtube	muscle
47	chr7:116663000-116663400	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr7:116663000-116663600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr7:116663000-116663600	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr7:116663000-116663600	Enhancers	Fetal Muscle Leg	muscle

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