Variant report

Variant	rs57144368
Chromosome Location	chr8:52452292-52452293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs16916514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916544	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916548	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916566	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916580	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56698894	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56731862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56822696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56882302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56885973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56926711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57050108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57085864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57096501	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57257431	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57775390	1.00[ASN][1000 genomes]
rs58224916	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58522786	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58565207	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58708912	1.00[ASN][1000 genomes]
rs59075579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59078405	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59111940	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59175915	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59477212	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59853746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60028043	1.00[ASN][1000 genomes]
rs60077137	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60163329	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60252507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60357838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60447705	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60556846	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60774747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61113860	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61277312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61283765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980547	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000152	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73572306	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73572319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73586762	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588713	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588718	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588720	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588727	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588728	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588729	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588743	1.00[ASN][1000 genomes]
rs73588745	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588746	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815071	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816855	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817121	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822112	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834186	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834664	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834676	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843200	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846331	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv890896	chr8:52428061-52454721	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52441600-52453000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links