Variant report

Variant	rs571447870
Chromosome Location	chr15:82749543-82749544
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB33	chr15:82749541-82749775	K562	blood:	n/a	n/a
2	GATA2	chr15:82747824-82750713	K562	blood:	n/a	chr15:82748716-82748727 chr15:82749955-82749967 chr15:82750634-82750642 chr15:82750471-82750492 chr15:82749958-82749968 chr15:82749956-82749966 chr15:82749956-82749965 chr15:82749958-82749965
3	CEBPD	chr15:82749385-82749846	K562	blood:	n/a	n/a

Variant related genes	Relation type
UBE2Q2P6	TF binding region
CSPG4P8	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054025	chr15:82540486-83058214	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3414396	chr15:82581647-82777145	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3512406	chr15:82581647-82787145	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3512407	chr15:82581647-82787145	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv904446	chr15:82599306-82828113	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv510669	chr15:82600766-83011258	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	21 gene(s)	inside rSNPs	diseases
7	esv1820106	chr15:82606410-83202155	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	31 gene(s)	inside rSNPs	diseases
8	nsv1053566	chr15:82606410-83204498	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	32 gene(s)	inside rSNPs	diseases
9	esv33165	chr15:82664410-83041871	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv1046321	chr15:82680087-83202155	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	29 gene(s)	inside rSNPs	diseases
11	esv1820227	chr15:82680824-82754250	Enhancers	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv999520	chr15:82693587-82793246	Enhancers	TF binding region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv833068	chr15:82694081-82897656	Active TSS Enhancers	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv977744	chr15:82695355-82817650	Enhancers	TF binding region lncRNA	9 gene(s)	inside rSNPs	diseases
15	esv13479	chr15:82721003-82813540	Enhancers	TF binding region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv9285	chr15:82721187-83054193	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	20 gene(s)	inside rSNPs	diseases
17	esv18754	chr15:82722175-82829609	Enhancers Active TSS	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
18	esv1829503	chr15:82723361-83036588	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	18 gene(s)	inside rSNPs	diseases
19	esv18177	chr15:82736602-82786353	Enhancers	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv976997	chr15:82740759-82765869	Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
21	nsv427965	chr15:82741381-83310525	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
22	nsv428309	chr15:82741381-83310525	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
23	esv16001	chr15:82747974-82769435	Enhancers	TF binding region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links